| Protein: | RHO4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 291 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHO4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..291] | [1..291] |
|
|
1.0E-93 | [17..274] | [12..257] |
|
|
3.0E-86 | [59..279] | [1..217] |
|
|
1.0E-85 | [59..279] | [1..217] |
|
|
3.0E-85 | [64..279] | [5..218] |
|
|
3.0E-85 | [64..279] | [5..218] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MNTLLFKRKG GNCGNESNIV SQGSPSSSNL PESPGTLDEK NLPRLPTPFA RSLSTIPSYE 60
61 QM
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.409 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.514 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.363 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.385 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.362 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.327 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.324 | a.109.1 | Class II MHC-associated invariant chain ectoplasmic trimerization domain |
| View | Download | 0.303 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.289 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.254 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.245 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.232 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
|
Region A: Residues: [63-291] |
1 11 21 31 41 51
| | | | | |
1 KRTNKLPDYH LKIVVVGDGA VGKTCLLISY VQGTFPTDYI PTIFENYVTN IEGPNGQIIE 60
61 LALWDTAGQE EYSRLRPLSY TNADVLMVCY SVGSKTSLKN VEDLWFPEVK HFCPSTPIML 120
121 VGLKSDLYEA DNLSDLVEPS SAESLAKRLG AFAHIQCSAR LKENIDEVFE TAIHTLLSDS 180
181 LYAPREPTHT IKNPFKRNTT RSDIDSSTGD TSVSISGTKR LRKNKCIIM
|
| Detection Method: | |
| Confidence: | 559.927757 |
| Match: | 1lb1B_ |
| Description: | RhoA |
Matching Structure (courtesy of the PDB): |
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