| Protein: | YSR3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 404 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSR3.
| Description | E-value | Query Range |
Subject Range |
|
|
344.0 | [0..30] | [403..29] |
|
|
282.0 | [0..23] | [398..11] |
|
|
273.0 | [0..24] | [403..22] |
|
|
270.0 | [0..75] | [403..124] |
|
|
270.0 | [0..75] | [403..124] |
|
|
265.0 | [0..75] | [403..128] |
|
|
257.0 | [0..73] | [403..210] |
|
|
254.0 | [0..75] | [403..128] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MTIIQTVTEL GVTEDTIKVQ MAPSGGKHLL ADPGNHPAEH FESQMSWLRF QTRQYLTRFT 60
61 DNQSDFVHSL QKKHRTPFRD VYFKYTSLM
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.666 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.612 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.590 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.580 | d.58.56 | Description not found. |
| View | Download | 0.576 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.449 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.413 | a.7.1 | Spectrin repeat |
| View | Download | 0.356 | a.7.1 | Spectrin repeat |
| View | Download | 0.321 | a.77.1 | DEATH domain |
|
Region A: Residues: [90-266] |
1 11 21 31 41 51
| | | | | |
1 GSHMFYVIVL PMPVWLGYRD LTRDMIYVLG YSIYLSGYLK DYWCLPRPKS PPVDRITLSE 60
61 YTTKEYGAPS SHSANATAVS LLFFWRICLS DTLVWPTKLL LLSLVIFYYL TLVFGRVYCG 120
121 MHGMLDLFSG AAVGAICFFI RIWVVHALRN FQIGEHLWFP LLSVAWGLFI LFNHVRP
|
| Detection Method: | |
| Confidence: | 16.39794 |
| Match: | 1d2tA |
| Description: | Bacterial acid phosphatase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [267-404] |
1 11 21 31 41 51
| | | | | |
1 IDECPCFEDS VAFIGVVSGL DCSDWLTERY GWNLVCSRYA SCGSKVFLRP LVGVASVIVW 60
61 KDVISKTAVY TLLIKLLRFH DDRSEKVHFH NETSEEEECL LYSGVSKVEI VGRFLIYAGI 120
121 PTTVFLLCPV FFTWTNLR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.838 | a.74.1 | Cyclin-like |
| View | Download | 0.801 | a.24.22 | Description not found. |
| View | Download | 0.768 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.748 | a.74.1 | Cyclin-like |
| View | Download | 0.741 | a.74.1 | Cyclin-like |
| View | Download | 0.738 | a.2.17 | Description not found. |
| View | Download | 0.737 | a.74.1 | Cyclin-like |
| View | Download | 0.715 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.674 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.654 | a.1.1 | Globin-like |
