| Protein: | CAF4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 659 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..659] | [1..659] |
|
|
0.0 | [95..659] | [903..1481] |
|
|
0.0 | [207..658] | [821..1247] |
|
Region A: Residues: [1-268] |
1 11 21 31 41 51
| | | | | |
1 MTYKITTSES KKEYLYMGSG DTRGESSLVA KPIEIILNKL PHAILAQQQF QKYITSPIYR 60
61 YLSKLLLFRE VAWPESTKDT QKGQVGIFSF QNNYADSATT FRILAHLDEH GYPLPNGAAE 120
121 KNLPSLFEGF KATVSIIQQR LLLDNVDGAT NSDKEKYVQL PDINTGFVNK TYSRIDLTHL 180
181 LEDVETNVEN LSINKTLEMD ELTRLDSMIN ELESRKLKIL ERVKHIDSKS TNLENDVTLI 240
241 KDRINFIEEY NLEADREQSL RKQMEEER
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [269-659] |
1 11 21 31 41 51
| | | | | |
1 SSEASSFTQN EEAISSLCDV ESKDTRLKDF YKMPHEKSHD KNRQIISETY SRNTTAFRMT 60
61 IPHGEHGNSI TALDFDTPWG TLCSSSYQDR IVKVWDLNHG IQVGELPGHL ATVNCMQIDK 120
121 KNYNMLITGS KDATLKLWDL NLSREIYLDH SPLKEKTEEI VTPCIHNFEL HKDEITALSF 180
181 DSEALVSGSR DKKIFHWDLT TGKCIQQLDL IFTPTHSDIK MPARSLNNGA CLLGTEAPMI 240
241 GALQCYNSAL ATGTKDGIVR LWDLRVGKPV RLLEGHTDGI TSLKFDSEKL VTGSMDNSVR 300
301 IWDLRTSSIL DVIAYDLPVS SLDFDGKLIT VGANEGGVNV FNMERDEHWM TPEPPHSLDG 360
361 DELSRRIAIV KYKDGFLING HNDGDINVWT L
|
| Detection Method: | |
| Confidence: | 164.37734 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [240-659] |
1 11 21 31 41 51
| | | | | |
1 IKDRINFIEE YNLEADREQS LRKQMEEERS SEASSFTQNE EAISSLCDVE SKDTRLKDFY 60
61 KMPHEKSHDK NRQIISETYS RNTTAFRMTI PHGEHGNSIT ALDFDTPWGT LCSSSYQDRI 120
121 VKVWDLNHGI QVGELPGHLA TVNCMQIDKK NYNMLITGSK DATLKLWDLN LSREIYLDHS 180
181 PLKEKTEEIV TPCIHNFELH KDEITALSFD SEALVSGSRD KKIFHWDLTT GKCIQQLDLI 240
241 FTPTHSDIKM PARSLNNGAC LLGTEAPMIG ALQCYNSALA TGTKDGIVRL WDLRVGKPVR 300
301 LLEGHTDGIT SLKFDSEKLV TGSMDNSVRI WDLRTSSILD VIAYDLPVSS LDFDGKLITV 360
361 GANEGGVNVF NMERDEHWMT PEPPHSLDGD ELSRRIAIVK YKDGFLINGH NDGDINVWTL 420
421
|
| Detection Method: | |
| Confidence: | 78.0 |
| Match: | 2ovpB |
| Description: | No description for 2ovpB was found. |
