| Protein: | SET3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 751 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SET3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..751] | [1..751] |
|
|
3.0E-65 | [122..495] | [53..435] |
|
|
3.0E-59 | [27..464] | [328..737] |
|
|
8.0E-59 | [4..476] | [3437..3865] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MSVPNSKEQS LLDDASTLLL FSKGKKRAEE ASKIGSKTDT IEHDESHERE KKGAIEMAAA 60
61 ALATASTVSL PLKKATEQSA AEAATSTAAK EETENQPQKQ PQWPVPDSYI
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.404 | a.1.1 | Globin-like |
| View | Download | 0.503 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.409 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.559 | a.46.1 | Methionine synthase domain |
| View | Download | 0.559 | a.46.1 | Methionine synthase domain |
| View | Download | 0.503 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.503 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.503 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.409 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.404 | a.1.1 | Globin-like |
| View | Download | 0.398 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.371 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.357 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.336 | a.29.2 | Bromodomain |
| View | Download | 0.323 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.320 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.317 | a.7.1 | Spectrin repeat |
| View | Download | 0.301 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.285 | a.7.1 | Spectrin repeat |
| View | Download | 0.285 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.278 | a.63.1 | Apolipophorin-III |
| View | Download | 0.273 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.265 | a.46.1 | Methionine synthase domain |
| View | Download | 0.264 | a.46.1 | Methionine synthase domain |
| View | Download | 0.261 | a.46.1 | Methionine synthase domain |
| View | Download | 0.257 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.254 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.253 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.252 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.251 | a.46.1 | Methionine synthase domain |
| View | Download | 0.248 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.247 | a.24.4 | Hemerythrin |
| View | Download | 0.245 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.237 | a.24.1 | Apolipoprotein |
| View | Download | 0.226 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.223 | a.24.3 | Cytochromes |
| View | Download | 0.221 | a.7.1 | Spectrin repeat |
| View | Download | 0.218 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.216 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.209 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.209 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.205 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.203 | a.7.1 | Spectrin repeat |
| View | Download | 0.202 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.202 | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [111-215] |
1 11 21 31 41 51
| | | | | |
1 VDPDAGIITC ICDLNDDDGF TIQCDHCNRW QHAICYGIKD IGMAPDDYLC NSCDPREVDI 60
61 NLARKIQQER INVKTVEPSS SNNSASNKNN GRDRASSTTI SDVGD
|
| Detection Method: | |
| Confidence: | 6.09691 |
| Match: | 1fp0A_ |
| Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [216-498] |
1 11 21 31 41 51
| | | | | |
1 SFSTDQDNTN HRDKRRKRNP SNNSIDSKNE SASVNSSDGL TSMPKKKEHF LSAKDAYGAI 60
61 YLPLKDNVFK SDLIEPFLNK HMDDNWVIQY PHKTFKSVSI EVKPYADIAY SRTYPGFTKL 120
121 GVYLKKDCIK GDFIQEILGE LDFYKNYLTD PRNHYRIWGT AKRRVIFHSH WPIYIDARLS 180
181 GNSTRYLRRS CQPNVELVTI KLQDTDNRND KSSGRKSSRI KFVLRALRDI SEDEELYIKW 240
241 QWDSKHPILK LIKGMTIDSL DDLERYGLIN SVETILSNGE CGC
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [499-751] |
1 11 21 31 41 51
| | | | | |
1 GNNSKDCYLL KVKRYAQSLY KSVKSRGKMN NRYKLNEILN QYNCKKRREP PILHRLEEKA 60
61 QNTIERAPIL LNNFYRQKFL NRNNGPKIPQ KNTIDSTNNP DDIAKPFKFA LFAQHSSNIS 120
121 VPKKNETSEK PLIITKSTDY DESHITNIEE LPIPVLLPIN KTSRQTANDV EESQSKNEHK 180
181 LSRTPSLSNF NKELSKEAQH SQAKTKEIMT EASVNSRRES TPESIMHLSD FSSSQLHSKK 240
241 KLSFADYRKK LLK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [580-751] |
1 11 21 31 41 51
| | | | | |
1 RNNGPKIPQK NTIDSTNNPD DIAKPFKFAL FAQHSSNISV PKKNETSEKP LIITKSTDYD 60
61 ESHITNIEEL PIPVLLPINK TSRQTANDVE ESQSKNEHKL SRTPSLSNFN KELSKEAQHS 120
121 QAKTKEIMTE ASVNSRREST PESIMHLSDF SSSQLHSKKK LSFADYRKKL LK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
