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View Structure Prediction Details

Protein: VPS51
Organism: Saccharomyces cerevisiae
Length: 164 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS51.

Description E-value Query
Range
Subject
Range
VPS51 - Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, wh...
gi|190409842 - gi|190409842|gb|EDV13107.1| vacuolar protein sorting protein 51 [Saccharomyces cerevisiae RM11-1a]
VPS51_YEAST - Vacuolar protein sorting-associated protein 51 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...
gi|151941564 - gi|151941564|gb|EDN59927.1| vacuolar sorting protein [Saccharomyces cerevisiae YJM789]
9.0E-70 [1..164] [1..164]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQISHKKS LRVSSLNKDR RLLLREFYNL ENEPNKGRQE ARIGEKASEA HSGEEQVTDV  60
   61 NIDTEANTEK PVKDDELSAT EEDLKEGSED AEEEIKNLPF KRLVQIHNKL LGKETETNNS 120
  121 IKNTIYENYY DLIKVNDLLK EITNANEDQI NKLKQTVESL IKEL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATEEDLKEGS EDAEEEIKNL PFKRLVQIHN KLLGKETETN NSIKNTIYEN YYDLIKVNDL  60
   61 LKEITNANED QINKLKQTVE SLIKEL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 15.309804
Match: PF08700.2
Description: No description for PF08700.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle