| Protein: | PAP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 568 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..568] | [17..528] |
|
|
0.0 | [1..566] | [15..566] |
|
|
0.0 | [1..568] | [1..568] |
|
|
0.0 | [4..568] | [17..528] |
|
|
0.0 | [4..568] | [17..528] |
|
|
0.0 | [4..568] | [17..528] |
|
|
0.0 | [3..568] | [17..529] |
|
Region A: Residues: [1-38] |
1 11 21 31 41 51
| | | | | |
1 MSSQKVFGIT GPVSTVGATA AENKLNDSLI QELKKEGS
|
|
Region B: Residues: [191-353] |
1 11 21 31 41 51
| | | | | |
1 TRVTDEILEL VPKPNVFRIA LRAIKLWAQR RAVYANIFGF PGGVAWAMLV ARICQLYPNA 60
61 CSAVILNRFF IILSEWNWPQ PVILKPIEDG PLQVRVWNPK IYAQDRSHRM PVITPAYPSM 120
121 CATHNITEST KKVILQEFVR GVQITNDIFS NKKSWANLFE KND
|
| Detection Method: |  |
| Confidence: | 10166.0 |
| Match: | 1fa0A_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| polynucleotide adenylyltransferase activity | 5.40967709450432 | bayes_pls_golite062009 |
| RNA binding | 2.46555984694381 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 2.12021443504286 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43322212500405 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.08480919674453 | bayes_pls_golite062009 |
| DNA binding | 0.920001549206154 | bayes_pls_golite062009 |
| binding | 0.888087430062829 | bayes_pls_golite062009 |
| catalytic activity | 0.75232920999699 | bayes_pls_golite062009 |
| protein binding | 0.516354942587518 | bayes_pls_golite062009 |
| transferase activity | 0.432029324907561 | bayes_pls_golite062009 |
|
Region A: Residues: [39-190] |
1 11 21 31 41 51
| | | | | |
1 FETEQETANR VQVLKILQEL AQRFVYEVSK KKNMSDGMAR DAGGKIFTYG SYRLGVHGPG 60
61 SDIDTLVVVP KHVTREDFFT VFDSLLRERK ELDEIAPVPD AFVPIIKIKF SGISIDLICA 120
121 RLDQPQVPLS LTLSDKNLLR NLDEKDLRAL NG
|
|
Region B: Residues: [354-568] |
1 11 21 31 41 51
| | | | | |
1 FFFRYKFYLE ITAYTRGSDE QHLKWSGLVE SKVRLLVMKL EVLAGIKIAH PFTKPFESSY 60
61 CCPTEDDYEM IQDKYGSHKT ETALNALKLV TDENKEEESI KDAPKAYLST MYIGLDFNIE 120
121 NKKEKVDIHI PCTEFVNLCR SFNEDYGDHK VFNLALRFVK GYDLPDEVFD ENEKRPSKKS 180
181 KRKNLDARHE TVKRSKSDAA SGDNINGTTA AVDVN
|
| Detection Method: | |
| Confidence: | 10166.0 |
| Match: | 1fa0A_ |
| Description: | Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
