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Protein Overview: PAPS4_ARATH

General Information:
Name(s) found: PAPS4_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 741 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM  60
   61 RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT FGSYRLGVHG PGADIDTLCV 120
  121 GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV 180
  181 PQDLDISSSS VLCEVDEPTV RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS 240
  241 NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP 300
  301 VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW 360
  361 SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF RQLTLKIERD TNGMLMCHPQ 420
  421 PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF 480
  481 VSHVRRRQLP PFVFPNGYRR PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM 540
  541 DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT 600
  601 DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR 660
  661 SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN LYSQSGMSED LQSNSLVSGM 720
  721 EKSEDRARSE SFQKSQIRLL T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..504] PSI-BLAST 170.0 Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
    2 View Details [505..741] MSA 11.206997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.122769147009 bayes_pls_golite062009
  • RNA binding
    		•  1.07207584601969 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.92178707322923 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  0.911825870004661 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.667889614569279 bayes_pls_golite062009
  • transferase activity
    		•  0.63270331673446 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle