| Protein: | DOA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 715 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DOA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..715] | [1..715] |
|
|
0.0 | [2..532] | [979..1495] |
|
|
0.0 | [5..508] | [823..1314] |
|
|
0.0 | [3..699] | [8..774] |
|
|
0.0 | [3..699] | [8..774] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MGYQLSATLK GHDQDVRDVV AVDDSKVASV SRDGTVRLWS KDDQWLGTVV YTGQGFLNSV 60
61 CYDSEKELLL FGGKDTMING VPLFATSGE
|
| Detection Method: |  |
| Confidence: | 149.626727 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [90-393] |
1 11 21 31 41 51
| | | | | |
1 DPLYTLIGHQ GNVCSLSFQD GVVISGSWDK TAKVWKEGSL VYNLQAHNAS VWDAKVVSFS 60
61 ENKFLTASAD KTIKLWQNDK VIKTFSGIHN DVVRHLAVVD DGHFISCSND GLIKLVDMHT 120
121 GDVLRTYEGH ESFVYCIKLL PNGDIVSCGE DRTVRIWSKE NGSLKQVITL PAISIWSVDC 180
181 MSNGDIIVGS SDNLVRIFSQ EKSRWASEDE INELSTQVEK STISSKTIEF DESKLSPYEI 240
241 LQSPGRKEGQ IVVVKSPQGT IEAHQFSNSS WKKVGDVVGA GATGNDKKIE FEGKTYDYVF 300
301 DVDI
|
| Detection Method: | |
| Confidence: | 58.190949 |
| Match: | 1gxrA_ |
| Description: | Groucho/tle1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [394-491] |
1 11 21 31 41 51
| | | | | |
1 EDGKPPLKLP INVSDNPYTA ADNFLARYEL PMSYRDQVVQ FILKNTNGIS LDQPNDNASS 60
61 SAVSPSKTSV MKVLPVKQYL IMENYNPDTI FNGIVKIN
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 1k8kC_ |
| Description: | Arp2/3 complex 41 kDa subunit ARPC1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [492-715] |
1 11 21 31 41 51
| | | | | |
1 SNEKTFDDEI LAQIGGALHD IDESWELLLS FANTIRSNWE IKTPAYDIVR LIVKKLPYSS 60
61 DIKDYIEEGL GNKNITLTML TVRILVNCFN NENWGVKLLE SNQVYKSIFE TIDTEFSQAS 120
121 AKQSQNLAIA VSTLIFNYSA LVTKGNSDLE LLPIVADAIN TKYGPLEEYQ ECEEAAYRLT 180
181 VAYGNLATVE PTLRQFANSV TWLANIKRSY GNVPRFKDIF DDLS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [515-715] |
1 11 21 31 41 51
| | | | | |
1 SWELLLSFAN TIRSNWEIKT PAYDIVRLIV KKLPYSSDIK DYIEEGLGNK NITLTMLTVR 60
61 ILVNCFNNEN WGVKLLESNQ VYKSIFETID TEFSQASAKQ SQNLAIAVST LIFNYSALVT 120
121 KGNSDLELLP IVADAINTKY GPLEEYQECE EAAYRLTVAY GNLATVEPTL RQFANSVTWL 180
181 ANIKRSYGNV PRFKDIFDDL S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
