YRC Public Data Repository - Protein Structure Prediction

Protein:	AIM27
Organism:	Saccharomyces cerevisiae
Length:	260 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIM27.

Description	E-value	Query Range	Subject Range
gi\|5823570, gi\|2... - gi\|7267961\|emb\|CAB78302.1\| putative protein [Arabidopsis thaliana], gi\|5823570\|emb\|CAB53752.1\| putat...	1.0E-79	[27..245]	[2..214]
gi\|194130449, gi... - gi\|195339929\|ref\|XP_002036569.1\| GM11489 [Drosophila sechellia], gi\|194130449\|gb\|EDW52492.1\| GM11489... gi\|194191018, gi... - gi\|195578311\|ref\|XP_002079009.1\| GD22233 [Drosophila simulans], gi\|194191018\|gb\|EDX04594.1\| GD22233 ... CG6750-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6750 (CG6750, FBgn0032292). It is a protein... gi\|220950088, gi... - gi\|220959142\|gb\|ACL92114.1\| CG6750-PA [synthetic construct], gi\|220950088\|gb\|ACL87587.1\| CG6750-PA [...	1.0E-77	[29..244]	[3..211]
EMC3_RAT - ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 EMC3_MOUSE - ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3	5.0E-76	[28..241]	[4..213]
ENSCJAT00000031683 - null gi\|55619789 - gi\|55619789\|ref\|XP_516272.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] TM111_PONPY - Transmembrane protein 111 - Pongo pygmaeus (Orangutan) tr\|M3WUY6\|M3WUY6... - ER membrane protein complex subunit 3 OS=Felis catus GN=EMC3 PE=3 SV=1 gi\|149728297 - gi\|149728297\|ref\|XP_001494113.1\| PREDICTED: similar to Transmembrane protein 111 [Equus caballus] EMC3_PONAB - ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 TMEM111 - transmembrane protein 111 gi\|57100904 - gi\|57100904\|ref\|XP_533744.1\| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris]	5.0E-76	[28..241]	[4..213]
CE22698 - status:Partially_confirmed UniProt:Q9U1X6 protein_id:CAB60598.1	2.0E-74	[29..244]	[3..216]
SPBC1711.03 - conserved eukaryotic protein YNY3_SCHPO - ER membrane protein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC...	2.0E-73	[29..244]	[3..215]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTINQHLQQL LFNRIDKTTS SIQQARAPQM LLDDQLKYWV LLPISIVMVL TGVLKQYIMT  60
   61 LITGSSANEA QPRVKLTEWQ YLQWAQLLIG NGGNLSSDAF AAKKEFLVKD LTEERHLAKA 120
  121 KQQDGSQAGE VP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPFNDPSMSN AMMNMAKGNM ASFIPQTIIM WWVNHFFAGF ILMQLPFPLT AKFKEMLQTG  60
   61 IICQDLDVRW VSSISWYFIS VLGLNPVYNL IGLNDQDMGI QAGIGGPQAP KALHNHRLTK 120
  121 QCMRWLTI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits