YRC Public Data Repository - Protein Structure Prediction

Protein:	ELF1
Organism:	Saccharomyces cerevisiae
Length:	145 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELF1.

Description	E-value	Query Range	Subject Range
SPAC1B3.02c - transcription elongation factor, Elf1 family ELOF1_SCHPO - Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	156.0	[0..1]	[104..1]
gi\|49525268 - gi\|49525268\|emb\|CAG58881.1\| unnamed protein product [Candida glabrata] gi\|50287065, gi\|... - gi\|50287065\|ref\|XP_445962.1\| unnamed protein product [Candida glabrata], gi\|49525268\|emb\|CAG58881.1\|...	153.0	[0..1]	[140..1]
gi\|44983882 - gi\|44983882\|gb\|AAS52918.1\| AER237Wp [Ashbya gossypii ATCC 10895] gi\|45190840, gi\|... - gi\|45190840\|ref\|NP_985094.1\| AER237Wp [Ashbya gossypii ATCC 10895], gi\|44983882\|gb\|AAS52918.1\| AER23...	142.0	[0..1]	[145..1]
ELOF1_ARATH - Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1	140.0	[0..1]	[83..1]
CE22483 - status:Confirmed UniProt:Q9XVZ8 protein_id:CAA22454.1	134.0	[0..1]	[83..1]
gi\|187030608, gi... - gi\|39582724\|emb\|CAE65930.1\| Hypothetical protein CBG11103 [Caenorhabditis briggsae], gi\|187030608\|em...	133.0	[0..1]	[83..1]
gi\|125538787 - gi\|125538787\|gb\|EAY85182.1\| hypothetical protein OsI_06540 [Oryza sativa Indica Group] ELOF1_ORYSA, U22... - (Q8LHP0) Hypothetical UPF0222 protein P0519E12.3, Transcription elongation factor 1 homolog - Oryza ... ELOF1_ORYSJ - Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1	130.0	[0..1]	[87..1]
ELOF1_MANSE - Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1	130.0	[0..1]	[81..1]
gi\|50312049, gi\|... - gi\|50312049\|ref\|XP_456056.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645192\|emb\|CAG9876... gi\|49645192 - gi\|49645192\|emb\|CAG98764.1\| KLLA0F21868p [Kluyveromyces lactis]	129.0	[0..1]	[145..1]
gi\|82997526, gi\|... - gi\|82997526\|ref\|XP_890191.1\| PREDICTED: similar to elongation factor 1 homolog (ELF1, S. cerevisiae)...	128.0	[0..1]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRKKSTRK PTKRLVQKLD TKFNCLFCNH EKSVSCTLDK KNSIGTLSCK ICGQSFQTRI  60
   61 NSLSQPVDVY SDWFDAVEEV NSGRGSDTDD GDEGSDSDYE SDSEQDAKTQ NDGEIDSDEE 120
  121 EVDSDEERIG QVKRGRGALV DSDDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1wiiA
Description:	Solution structure of RSGI RUH-025, a DUF701 domain from mouse cDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits