| Protein: | SDH3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 198 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDH3.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-55 | [1..198] | [1..198] |
|
|
2.0E-44 | [23..197] | [3..171] |
|
|
5.0E-44 | [31..197] | [6..167] |
|
|
6.0E-43 | [31..197] | [6..167] |
|
|
6.0E-42 | [31..181] | [6..152] |
|
|
9.0E-40 | [31..181] | [6..152] |
|
|
2.0E-37 | [13..198] | [10..180] |
|
Region A: Residues: [1-53] |
1 11 21 31 41 51
| | | | | |
1 MSAMMVKLGL NKSALLLKPS AFSRAAALSS SRRLLFNTAR TNFLSTSPLK NVA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.502 | b.34.2 | SH3-domain |
| View | Download | 0.462 | b.34.1 | C-terminal domain of transcriptional repressors |
| View | Download | 0.468 | b.34.9 | Tudor/PWWP/MBT |
| View | Download | 0.488 | b.34.7 | DNA-binding domain of retroviral integrase |
| View | Download | 0.468 | b.34.2 | SH3-domain |
| View | Download | 0.431 | d.37.1 | CBS-domain |
| View | Download | 0.419 | b.34.3 | Myosin S1 fragment, N-terminal domain |
| View | Download | 0.407 | b.34.1 | C-terminal domain of transcriptional repressors |
| View | Download | 0.375 | b.34.2 | SH3-domain |
| View | Download | 0.368 | b.34.3 | Myosin S1 fragment, N-terminal domain |
| View | Download | 0.349 | b.34.2 | SH3-domain |
| View | Download | 0.324 | b.34.7 | DNA-binding domain of retroviral integrase |
| View | Download | 0.304 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.286 | g.55.1 | Cellulose docking domain, dockering |
| View | Download | 0.274 | g.55.1 | Cellulose docking domain, dockering |
| View | Download | 0.249 | d.9.2 | Description not found. |
| View | Download | 0.231 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.222 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.219 | b.34.2 | SH3-domain |
|
Region A: Residues: [54-198] |
1 11 21 31 41 51
| | | | | |
1 SEMNTKAAIA EEQILNKQRA KRPISPHLTI YQPQLTWYLS SLHRISLVLM GLGFYLFTIL 60
61 FGVSGLLGLG LTTEKVSNWY HQKFSKITEW SIKGSFAYLF AIHYGGAIRH LIWDTAKELT 120
121 LKGVYRTGYA LIGFTAVLGT YLLTL
|
| Detection Method: | |
| Confidence: | 59.468521 |
| Match: | PF01127 |
| Description: | Succinate dehydrogenase cytochrome b subunit |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
