YRC Public Data Repository - Protein Structure Prediction

Protein:	RRN3
Organism:	Saccharomyces cerevisiae
Length:	627 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRN3.

Description	E-value	Query Range	Subject Range
gi\|109127665 - gi\|109127665\|ref\|XP_001108222.1\| PREDICTED: similar to Tif-IA CG3278-PA isoform 2 [Macaca mulatta]	640.0	[0..55]	[619..55]
RRN3 - RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)	638.0	[0..55]	[619..55]
RRN3_PONAB - RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3 PE=2 SV=1 RRN3_PONPY - RNA polymerase I-specific transcription initiation factor RRN3 - Pongo pygmaeus (Orangutan)	613.0	[0..55]	[619..55]
gi\|73959061 - gi\|73959061\|ref\|XP_536965.2\| PREDICTED: similar to RRN3 RNA polymerase I transcription factor homolo...	607.0	[0..55]	[619..55]
gi\|4587515, gi\|2... - gi\|4587515\|gb\|AAD25746.1\|AC007060_4 EST gb\|Z37678 comes from this gene. [Arabidopsis thaliana], pir\|...	599.0	[0..47]	[627..21]
gi\|114661146 - gi\|114661146\|ref\|XP_001143837.1\| PREDICTED: RRN3 RNA polymerase I transcription factor homolog, part...	598.0	[0..88]	[619..28]
RRN3_MOUSE - RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1	583.0	[0..55]	[619..53]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAFENTSKR PPQDFVAPID QKKRKVQFSD STGLVTLQPE EIKDEVFSAA MYSRFVKSAL  60
   61 DDLDKNDSTQ IGIIANQVAL PSKNPERIND KNLNILLDIL SSNINRIESS RGTFLIQSII 120
  121 NFEKWWELPP HTLSKYIYFI KILCSSIPKW WQDVSMILVS CFILPIKQTV CHHDMLKYFL 180
  181 RMIPSSMGFI DTYLAKFFPN KNDTRRKLVN YTSNLLKLRG YCSELGFQIW SLLIEKIISI 240
  241 DVELQNELDE LDDDVDDDDL EEVDLEDDDD LD

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	8.3
Match:
Description:	No description for 1b3uA was found.

Predicted Domain #2

Region A:
Residues: [273-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDSGDDDDEN CGNSNEELRS GAADGSQSDS EDMDIIEGMD GTEEYNVELT QGIKELSTKL  60
   61 DSILTLVSTH VEEQVTPESL ESGEGVGVFN TLTTLFKTHV LPTYYTRSIQ YIMFHVSQQQ 120
  121 LELMDSFLVT LIDISFAVNE AAEKKIKSLQ YLGSYIARAK KLSRTQIIFV ASYLTSWLNR 180
  181 YVIEREEEVD QRGGMERFKH FYAAFQALCY IFCFRHNIFR DTDGNWECEL DK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [505-627]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFQRMVISKF NPLKFCNENV MLMFARIAQQ ESVAYCFSII ENNNNERLRG IIGKADSDKK  60
   61 ENSAQANTTS SSWSLATRQQ FIDLQSYFPY DPLFLKNYKI LMKEYYIEWS EASGEYESDG 120
  121 SDD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits