YRC Public Data Repository - Protein Structure Prediction

Protein:	SRX1
Organism:	Saccharomyces cerevisiae
Length:	127 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRX1.

Description	E-value	Query Range	Subject Range
gi\|190409744 - gi\|190409744\|gb\|EDV13009.1\| sulfiredoxin [Saccharomyces cerevisiae RM11-1a] gi\|151941718 - gi\|151941718\|gb\|EDN60080.1\| ATP-dependent cysteine sulfinic acid reductase [Saccharomyces cerevisiae... SRX1_YEAST - Sulfiredoxin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRX1 PE=1 SV=1 SRX1 - Sulfiredoxin, contributes to oxidative stress resistance by reducing cysteine-sulfinic acid groups i...	2.0E-49	[1..127]	[1..127]
srx1 - sulfiredoxin SRX1_SCHPO - Sulfiredoxin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srx1 PE=1 SV=1	2.0E-36	[12..123]	[14..116]
gi\|15030144 - gi\|15030144\|gb\|AAH11325.1\| Sulfiredoxin 1 homolog (S. cerevisiae) [Mus musculus]	1.0E-31	[10..123]	[40..131]
gi\|16877494 - gi\|16877494\|gb\|AAH17001.1\| SRXN1 protein [Homo sapiens]	3.0E-31	[10..123]	[34..125]
CG6762-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6762 (CG6762, FBgn0030876). It is a protein...	8.0E-30	[11..123]	[64..156]
gi\|17133281, gi\|... - gi\|17231638\|ref\|NP_488186.1\| hypothetical protein asl4146 [Nostoc sp. PCC 7120], gi\|17133281\|dbj\|BAB... gi\|25530947 - pir\|\|AC2324 hypothetical protein asl4146 [imported] - Nostoc sp. (strain PCC 7120) gi\|75700706, gi\|... - gi\|75906981\|ref\|YP_321277.1\| sulfiredoxin [Anabaena variabilis ATCC 29413], gi\|75700706\|gb\|ABA20382....	4.0E-24	[8..120]	[2..86]
gi\|4512613, gi\|2... - gi\|4512613\|gb\|AAD21682.1\| F28K20.12 [Arabidopsis thaliana], pir\|\|F86437 protein F28K20.12 [imported]...	5.0E-24	[5..127]	[33..130]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQSNSVKP TEIPLSEIRR PLAPVLDPQK IDAMVATMKG IPTASKTCSL EQAEAAASAG  60
   61 ELPPVDVLGV RVKGQTLYYA FGGCHRLQAY DRRARETQNA AFPVRCRVLP ATPRQIRMYL 120
  121 GSSLDIE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.09691
Match:	PF02195
Description:	ParB-like nuclease domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
DNA binding	2.28767419294285	bayes_pls_golite062009
binding	2.22126358531565	bayes_pls_golite062009
nucleic acid binding	1.30626987701529	bayes_pls_golite062009
protein binding	0.753434614974221	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: