YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MDH1
Organism: Saccharomyces cerevisiae
Length: 334 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDH1.

Description E-value Query
Range		 Subject
Range
gi|17368677, gi|... - gi|17368677|sp|Q9BE24|LDHA_MACFA L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M...
 0.0 [1..330] [8..332]
LDHA - lactate dehydrogenase A
 0.0 [1..330] [7..331]
LDHA_PIG - L-lactate dehydrogenase A chain OS=Sus scrofa GN=LDHA PE=1 SV=3
gi|473571 - gi|473571|gb|AAA50436.1| lactate dehydrogenase-A
 0.0 [1..330] [8..332]
LDHA_MONDO - L-lactate dehydrogenase A chain OS=Monodelphis domestica GN=LDHA PE=2 SV=3
 0.0 [1..330] [8..332]
gi|55249958 - gb|AAH86251.1| Unknown (protein for MGC:98768) [Xenopus laevis]
LDHA_MOUSE - L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3
 0.0 [1..330] [8..332]
LDHA_RAT - L-lactate dehydrogenase A chain OS=Rattus norvegicus GN=Ldha PE=1 SV=1
 0.0 [1..330] [8..332]
LDHA_BOVIN - L-lactate dehydrogenase A chain OS=Bos taurus GN=LDHA PE=2 SV=2
 0.0 [1..330] [8..332]
LDHA_RABIT - L-lactate dehydrogenase A chain OS=Oryctolagus cuniculus GN=LDHA PE=1 SV=3
 0.0 [1..330] [8..332]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 0.0 [1..330] [7..331]

Back

Predicted Domain #1
Region A:
Residues: [1-334] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRVAKRAF SSTVANPYKV TVLGAGGGIG QPLSLLLKLN HKVTDLRLYD LKGAKGVATD  60
   61 LSHIPTNSVV KGFTPEEPDG LNNALKDTDM VLIPAGVPRK PGMTRDDLFA INASIVRDLA 120
  121 AATAESAPNA AILVISNPVN STVPIVAQVL KNKGVYNPKK LFGVTTLDSI RAARFISEVE 180
  181 NTDPTQERVN VIGGHSGITI IPLISQTNHK LMSDDKRHEL IHRIQFGGDE VVKAKNGAGS 240
  241 ATLSMAHAGA KFANAVLSGF KGERDVIEPS FVDSPLFKSE GIEFFASPVT LGPDGIEKIH 300
  301 PIGELSSEEE EMLQKCKETL KKNIEKGVNF VASK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 916.9794
Match: 1mldA_
Description: Malate dehydrogenase
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle