| Protein: | LHS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 881 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [19..680] | [1..610] |
|
|
0.0 | [14..716] | [1..650] |
|
|
0.0 | [17..682] | [3..617] |
|
|
0.0 | [17..716] | [3..641] |
|
|
0.0 | [22..682] | [6..615] |
|
|
0.0 | [18..682] | [2..613] |
|
|
0.0 | [17..716] | [3..645] |
|
|
0.0 | [22..716] | [3..656] |
|
|
0.0 | [18..680] | [2..611] |
|
|
0.0 | [17..704] | [3..637] |
|
Region A: Residues: [1-209] |
1 11 21 31 41 51
| | | | | |
1 MRNVLRLLFL TAFVAIGSLA AVLGVDYGQQ NIKAIVVSPQ APLELVLTPE AKRKEISGLS 60
61 IKRLPGYGKD DPNGIERIYG SAVGSLATRF PQNTLLHLKP LLGKSLEDET TVTLYSKQHP 120
121 GLEMVSTNRS TIAFLVDNVE YPLEELVAMN VQEIANRANS LLKDRDARTE DFVNKMSFTI 180
181 PDFFDQHQRK ALLDASSITT GIEETYLVS
|
|
Region B: Residues: [420-438] |
1 11 21 31 41 51
| | | | | |
1 ESAVNGVVMR GIKLSNSFK
|
| Detection Method: |  |
| Confidence: | 1276.9897 |
| Match: | 1ba0__ |
| Description: | Heat shock protein 70kDa, ATPase fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [210-276] |
1 11 21 31 41 51
| | | | | |
1 EGMSVAVNFV LKQRQFPPGE QQHYIVYDMG SGSIKASMFS ILQPEDTTQP VTIEFEGYGY 60
61 NPHLGGA
|
|
Region B: Residues: [356-419] |
1 11 21 31 41 51
| | | | | |
1 ADSLLDIVKP INDAVTKQFG GYGTNLPEIN GVILAGGSSR IPIVQDQLIK LVSEEKVLRN 60
61 VNAD
|
| Detection Method: | |
| Confidence: | 1276.9897 |
| Match: | 1ba0__ |
| Description: | Heat shock protein 70kDa, ATPase fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [277-355] |
1 11 21 31 41 51
| | | | | |
1 KFTMDIGSLI ENKFLETHPA IRTDELHANP KALAKINQAA EKAKLILSAN SEASINIESL 60
61 INDIDFRTSI TRQEFEEFI
|
| Detection Method: | |
| Confidence: | 1276.9897 |
| Match: | 1ba0__ |
| Description: | Heat shock protein 70kDa, ATPase fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [439-602] |
1 11 21 31 41 51
| | | | | |
1 TKPLNVVDRS VNTYSFKLSN ESELYDVFTR GSAYPNKTSI LTNTTDSIPN NFTIDLFENG 60
61 KLFETITVNS GAIKNSYSSD KCSSGVAYNI TFDLSSDRLF SIQEVNCICQ SENDIGNSKQ 120
121 IKNKGSRLAF TSEDVEIKRL SPSERSRLHE HIKLLDKQDK ERFQ
|
| Detection Method: | |
| Confidence: | 85.0 |
| Match: | 1dkxA_ |
| Description: | DnaK |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [603-709] |
1 11 21 31 41 51
| | | | | |
1 FQENLNVLES NLYDARNLLM DDEVMQNGPK SQVEELSEMV KVYLDWLEDA SFDTDPEDIV 60
61 SRIREIGILK KKIELYMDSA KEPLNSQQFK GMLEEGHKLL QAIETHK
|
| Detection Method: | |
| Confidence: | 85.0 |
| Match: | 1dkxA_ |
| Description: | DnaK |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [710-881] |
1 11 21 31 41 51
| | | | | |
1 NTVEEFLSQF ETEFADTIDN VREEFKKIKQ PAYVSKALST WEETLTSFKN SISEIEKFLA 60
61 KNLFGEDLRE HLFEIKLQFD MYRTKLEEKL RLIKSGDESR LNEIKKLHLR NFRLQKRKEE 120
121 KLKRKLEQEK SRNNNETEST VINSADDKTT IVNDKTTESN PSSEEDILHD EL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
