| Protein: | DEF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 738 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEF1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-51 | [22..635] | [758..1367] |
|
|
1.0E-49 | [3..677] | [1012..1662] |
|
|
4.0E-47 | [2..443] | [43..474] |
|
|
2.0E-44 | [3..669] | [72..758] |
|
|
7.0E-44 | [2..626] | [226..860] |
|
|
9.0E-43 | [1..468] | [565..1025] |
|
|
2.0E-42 | [9..645] | [106..750] |
|
|
4.0E-42 | [4..598] | [570..1129] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MSTQFRKSNH NSHSSKKLNP ALKSKIDTLT ELFPDWTSDD LIDIVQEYDD LETIIDKITS 60
61 GAVTRWDEVK KPAKKEKYEK KEQQHSYVPQ QHLPNPEDDI TYKSSNNSNS FTSTKHNSSN 120
121 NYTQARNKKK VQTPRAHTTG KHVNLDKGKH VPSKPVSNTT SWAAAVSVDT KHDVPQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [177-185] |
1 11 21 31 41 51
| | | | | |
1 DSNDNNNEE
|
|
Region B: Residues: [412-484] |
1 11 21 31 41 51
| | | | | |
1 QQPQQPQQQL QQQQQQQQQP VQAQAQAQEE QLSQNYYTQQ QQQQYAQQQH QLQQQYLSQQ 60
61 QQYAQQQQQH PQP
|
| Detection Method: | |
| Confidence: | 13.67 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [186-258] |
1 11 21 31 41 51
| | | | | |
1 LEAQGQQAQE KNQEKEQEEQ QQQEGHNNKE EHKQIEQPSL SSKKTTSRTS ASQPKKMSWA 60
61 AIATPKPKAV KKT
|
| Detection Method: | |
| Confidence: | 13.67 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [259-341] |
1 11 21 31 41 51
| | | | | |
1 ESPLENVAEL KKEISDIKKD DQKSEASEEK VNEQETSAQE QEEETAEPSE ENEDRVPEVD 60
61 GEEVQEEAEK KEQVKEEEQT AEE
|
| Detection Method: | |
| Confidence: | 13.67 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [342-411] |
1 11 21 31 41 51
| | | | | |
1 LEQEQDNVAA PEEEVTVVEE KVEISAVISE PPEDQANTVP QPQQQSQQPQ QPQQPQQPQQ 60
61 PQQPQQQQQP
|
| Detection Method: | |
| Confidence: | 13.67 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [485-613] |
1 11 21 31 41 51
| | | | | |
1 QSQQPQSQQS PQSQKQGNNV AAQQYYMYQN QFPGYSYPGM FDSQGYAYGQ QYQQLAQNNA 60
61 QTSGNANQYN FQQGYGQAGA NTAAANLTSA AAAAAASPAT AHAQPQQQQP YGGSFMPYYA 120
121 HFYQQSFPY
|
| Detection Method: | |
| Confidence: | 10.9 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [614-738] |
1 11 21 31 41 51
| | | | | |
1 GQPQYGVAGQ YPYQLPKNNY NYYQTQNGQE QQSPNQGVAQ HSEDSQQKQS QQQQQQQPQG 60
61 QPQPEVQMQN GQPVNPQQQM QFQQYYQFQQ QQQQAAAAAA AAAQQGVPYG YNGYDYNSKN 120
121 SRGFY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
