Protein: | DEF1 |
Organism: | Saccharomyces cerevisiae |
Length: | 738 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEF1.
Description | E-value | Query Range |
Subject Range |
|
1.0E-51 | [22..635] | [758..1367] |
|
1.0E-49 | [3..677] | [1012..1662] |
|
4.0E-47 | [2..443] | [43..474] |
|
2.0E-44 | [3..669] | [72..758] |
|
7.0E-44 | [2..626] | [226..860] |
|
9.0E-43 | [1..468] | [565..1025] |
|
2.0E-42 | [9..645] | [106..750] |
|
4.0E-42 | [4..598] | [570..1129] |
Region A: Residues: [1-176] |
1 11 21 31 41 51 | | | | | | 1 MSTQFRKSNH NSHSSKKLNP ALKSKIDTLT ELFPDWTSDD LIDIVQEYDD LETIIDKITS 60 61 GAVTRWDEVK KPAKKEKYEK KEQQHSYVPQ QHLPNPEDDI TYKSSNNSNS FTSTKHNSSN 120 121 NYTQARNKKK VQTPRAHTTG KHVNLDKGKH VPSKPVSNTT SWAAAVSVDT KHDVPQ |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [177-185] |
1 11 21 31 41 51 | | | | | | 1 DSNDNNNEE |
Region B: Residues: [412-484] |
1 11 21 31 41 51 | | | | | | 1 QQPQQPQQQL QQQQQQQQQP VQAQAQAQEE QLSQNYYTQQ QQQQYAQQQH QLQQQYLSQQ 60 61 QQYAQQQQQH PQP |
Detection Method: | |
Confidence: | 13.67 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [186-258] |
1 11 21 31 41 51 | | | | | | 1 LEAQGQQAQE KNQEKEQEEQ QQQEGHNNKE EHKQIEQPSL SSKKTTSRTS ASQPKKMSWA 60 61 AIATPKPKAV KKT |
Detection Method: | |
Confidence: | 13.67 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [259-341] |
1 11 21 31 41 51 | | | | | | 1 ESPLENVAEL KKEISDIKKD DQKSEASEEK VNEQETSAQE QEEETAEPSE ENEDRVPEVD 60 61 GEEVQEEAEK KEQVKEEEQT AEE |
Detection Method: | |
Confidence: | 13.67 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [342-411] |
1 11 21 31 41 51 | | | | | | 1 LEQEQDNVAA PEEEVTVVEE KVEISAVISE PPEDQANTVP QPQQQSQQPQ QPQQPQQPQQ 60 61 PQQPQQQQQP |
Detection Method: | |
Confidence: | 13.67 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [485-613] |
1 11 21 31 41 51 | | | | | | 1 QSQQPQSQQS PQSQKQGNNV AAQQYYMYQN QFPGYSYPGM FDSQGYAYGQ QYQQLAQNNA 60 61 QTSGNANQYN FQQGYGQAGA NTAAANLTSA AAAAAASPAT AHAQPQQQQP YGGSFMPYYA 120 121 HFYQQSFPY |
Detection Method: | |
Confidence: | 10.9 |
Match: | 1deqA |
Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [614-738] |
1 11 21 31 41 51 | | | | | | 1 GQPQYGVAGQ YPYQLPKNNY NYYQTQNGQE QQSPNQGVAQ HSEDSQQKQS QQQQQQQPQG 60 61 QPQPEVQMQN GQPVNPQQQM QFQQYYQFQQ QQQQAAAAAA AAAQQGVPYG YNGYDYNSKN 120 121 SRGFY |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.526 | a.22.1 | Histone-fold |
View | Download | 0.318 | a.133.1 | Phospholipase A2, PLA2 |
View | Download | 0.248 | d.2.1 | Lysozyme-like |
View | Download | 0.313 | a.22.1 | Histone-fold |
View | Download | 0.236 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
View | Download | 0.231 | a.24.3 | Cytochromes |
View | Download | 0.211 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.207 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |