| Protein: | CDC16 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 840 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC16.
| Description | E-value | Query Range |
Subject Range |
|
|
405.0 | [0..11] | [840..770] |
|
|
394.0 | [0..17] | [833..83] |
|
|
364.0 | [0..27] | [834..255] |
|
|
358.0 | [0..11] | [840..576] |
|
|
355.0 | [0..295] | [791..20] |
|
|
355.0 | [0..292] | [791..7] |
|
|
353.0 | [0..292] | [791..7] |
|
|
352.0 | [0..224] | [773..60] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MKFCLYCCHC YIVICGKATH YYKSSKATSN LKSSNRVLMR NPMSPSEQHS QHNSTLAASP 60
61 FVSNVSAART QQSLPTDAQN DRLQQPWNRT NT
|
| Detection Method: |  |
| Confidence: | 13.045757 |
| Match: | 1elwA |
| Description: | Hop |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [93-206] |
1 11 21 31 41 51
| | | | | |
1 ATSPYQSLAN SPLIQKLQAN IMTPHQPSAN SNSNSNSITG NVVNDNNLLA SMSKNSMFGS 60
61 TIPSTLRKVS LQREYKDSVD GVVRDEDNDE DVHNNGDAAA NANNDRESKL GHNG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [207-302] |
1 11 21 31 41 51
| | | | | |
1 PLTTTTLTTT TTATQLDVSE LSAIERLRLW RFDALMQHMY RTAEYIADKV YNISNDPDDA 60
61 FWLGQVYYNN NQYVRAVELI TRNNLDGVNI LCRYLL
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [303-418] |
1 11 21 31 41 51
| | | | | |
1 GLSFVKLQRF DDALDVIGEY NPFSEDPSTT AANTMSNNGN NSNTSQPVTD GGIKMESSLC 60
61 FLRGKIYFAQ NNFNKARDAF REAILVDIKN FEAFEMLLSK NLLTPQEEWD LFDSLD
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [419-579] |
1 11 21 31 41 51
| | | | | |
1 FKEFGEDKEI MKNLYKINLS KYINTEDITK SNEILAKDYK LADNVDVVRS KVDICYTQCK 60
61 FNECLELCET VLENDEFNTN ILPAYIGCLY ELSNKNKLFL LSHRLAETFP KSAITWFSVA 120
121 TYYMSLDRIS EAQKYYSKSS ILDPSFAAAW LGFAHTYALE G
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [580-647] |
1 11 21 31 41 51
| | | | | |
1 EQDQALTAYS TASRFFPGMH LPKLFLGMQF MAMNSLNLAE SYFVLAYDIC PNDPLVLNEM 60
61 GVMYFKKN
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [648-788] |
1 11 21 31 41 51
| | | | | |
1 EFVKAKKYLK KALEVVKDLD PSSRTTISIQ LNLGHTYRKL NENEIAIKCF RCVLEKNDKN 60
61 SEIHCSLGYL YLKTKKLQKA IDHLHKSLYL KPNNSSATAL LKNALELNVT LSLDASHPLI 120
121 DKSNLMSQAS KDKASLNKKR S
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [789-840] |
1 11 21 31 41 51
| | | | | |
1 SLTYDPVNMA KRLRTQKEIF DQNNKALRKG GHDSKTGSNN ADDDFDADME LE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
