Protein: | CDC16 |
Organism: | Saccharomyces cerevisiae |
Length: | 840 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC16.
Description | E-value | Query Range |
Subject Range |
|
405.0 | [0..11] | [840..770] |
|
394.0 | [0..17] | [833..83] |
|
364.0 | [0..27] | [834..255] |
|
358.0 | [0..11] | [840..576] |
|
355.0 | [0..295] | [791..20] |
|
355.0 | [0..292] | [791..7] |
|
353.0 | [0..292] | [791..7] |
|
352.0 | [0..224] | [773..60] |
Region A: Residues: [1-92] |
1 11 21 31 41 51 | | | | | | 1 MKFCLYCCHC YIVICGKATH YYKSSKATSN LKSSNRVLMR NPMSPSEQHS QHNSTLAASP 60 61 FVSNVSAART QQSLPTDAQN DRLQQPWNRT NT |
Detection Method: | |
Confidence: | 13.045757 |
Match: | 1elwA |
Description: | Hop |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [93-206] |
1 11 21 31 41 51 | | | | | | 1 ATSPYQSLAN SPLIQKLQAN IMTPHQPSAN SNSNSNSITG NVVNDNNLLA SMSKNSMFGS 60 61 TIPSTLRKVS LQREYKDSVD GVVRDEDNDE DVHNNGDAAA NANNDRESKL GHNG |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.436 | a.74.1 | Cyclin-like |
View | Download | 0.436 | a.74.1 | Cyclin-like |
View | Download | 0.398 | a.118.9 | ENTH/VHS domain |
View | Download | 0.274 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.274 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.242 | a.24.28 | Description not found. |
View | Download | 0.225 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.225 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
Region A: Residues: [207-302] |
1 11 21 31 41 51 | | | | | | 1 PLTTTTLTTT TTATQLDVSE LSAIERLRLW RFDALMQHMY RTAEYIADKV YNISNDPDDA 60 61 FWLGQVYYNN NQYVRAVELI TRNNLDGVNI LCRYLL |
Detection Method: | |
Confidence: | 3.30103 |
Match: | 1hz4A |
Description: | Transcription factor MalT domain III |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [303-418] |
1 11 21 31 41 51 | | | | | | 1 GLSFVKLQRF DDALDVIGEY NPFSEDPSTT AANTMSNNGN NSNTSQPVTD GGIKMESSLC 60 61 FLRGKIYFAQ NNFNKARDAF REAILVDIKN FEAFEMLLSK NLLTPQEEWD LFDSLD |
Detection Method: | |
Confidence: | 3.30103 |
Match: | 1hz4A |
Description: | Transcription factor MalT domain III |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [419-579] |
1 11 21 31 41 51 | | | | | | 1 FKEFGEDKEI MKNLYKINLS KYINTEDITK SNEILAKDYK LADNVDVVRS KVDICYTQCK 60 61 FNECLELCET VLENDEFNTN ILPAYIGCLY ELSNKNKLFL LSHRLAETFP KSAITWFSVA 120 121 TYYMSLDRIS EAQKYYSKSS ILDPSFAAAW LGFAHTYALE G |
Detection Method: | |
Confidence: | 41.522879 |
Match: | 1fchA |
Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [580-647] |
1 11 21 31 41 51 | | | | | | 1 EQDQALTAYS TASRFFPGMH LPKLFLGMQF MAMNSLNLAE SYFVLAYDIC PNDPLVLNEM 60 61 GVMYFKKN |
Detection Method: | |
Confidence: | 41.522879 |
Match: | 1fchA |
Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [648-788] |
1 11 21 31 41 51 | | | | | | 1 EFVKAKKYLK KALEVVKDLD PSSRTTISIQ LNLGHTYRKL NENEIAIKCF RCVLEKNDKN 60 61 SEIHCSLGYL YLKTKKLQKA IDHLHKSLYL KPNNSSATAL LKNALELNVT LSLDASHPLI 120 121 DKSNLMSQAS KDKASLNKKR S |
Detection Method: | |
Confidence: | 41.522879 |
Match: | 1fchA |
Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [789-840] |
1 11 21 31 41 51 | | | | | | 1 SLTYDPVNMA KRLRTQKEIF DQNNKALRKG GHDSKTGSNN ADDDFDADME LE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.226 | a.60.1 | SAM/Pointed domain |