| Protein: | URB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1764 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1764] | [1..1764] |
|
|
0.0 | [86..750] | [26..685] |
|
|
0.0 | [32..687] | [26..712] |
|
|
0.0 | [30..509] | [472..905] |
|
|
2.0E-36 | [17..217] | [23..222] |
|
Region A: Residues: [1-230] |
1 11 21 31 41 51
| | | | | |
1 MSNHSEAYGS RDQRREKYTQ GKEFEDGTLE TLESIISAVE DETLSKDYQP LIVFFQRGFG 60
61 AQLVQTWSYY AQVNNHGKFS KTTSLLTKTL RVLSSDTSTV TIGSGLIRLI LTDYTKVLYR 120
121 GLNNMRAQLT NPILRLLKQI VNFNNGQHIE ELVSYFDFSL PILPRLLVPS KSELANGNSS 180
181 ADSSKHDSLR FTFIKFWLTL ISNASPFVRK ELLTENFKIM SNLFKFMNKA
|
| Detection Method: |  |
| Confidence: | 2.59 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.36800795249393 | bayes_pls_golite062009 |
| RNA binding | 1.78069099517213 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59410102249793 | bayes_pls_golite062009 |
| protein binding | 1.3800948965226 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08645493064764 | bayes_pls_golite062009 |
| DNA binding | 0.956143892328242 | bayes_pls_golite062009 |
| transcription factor activity | 0.371244009721798 | bayes_pls_golite062009 |
| structural molecule activity | 0.174654450621335 | bayes_pls_golite062009 |
| mRNA binding | 0.107084556647027 | bayes_pls_golite062009 |
|
Region A: Residues: [231-304] |
1 11 21 31 41 51
| | | | | |
1 DSDKLSEHIL SVFINDILKE KSFKRTTKTK ILNELAASKI HHFYYSSNKN LVKKANEFFL 60
61 TFGASRDFSV AFPD
|
| Detection Method: | |
| Confidence: | 2.59 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [305-456] |
1 11 21 31 41 51
| | | | | |
1 NCVWFKNSVA DGASHGAPIT VNQVEFQIHN KLLFNTLRLF KPWEDTLQLG TLIKILENVP 60
61 ELVAPYSIFL TTNGNYDPKM TSYWFGITLL INKIINLKIP QFMEKVDSNI PPATSLVIEN 120
121 ILPSLLTKSS LVKSLQFETP IIRQLACQSI VL
|
| Detection Method: | |
| Confidence: | 2.59 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [457-693] |
1 11 21 31 41 51
| | | | | |
1 ALKKLEKVST FYDQKGWRNE KTILLNEFHT RIPDLPIFVS TLSNSLASNK DNRILPLSIS 60
61 IIFNYYSKMF PNLFSINLPS SNIYTDIMQK SKISGIEFAI LDNYLQFQEF NSTQTRWWNP 120
121 SSGGNSLFTL LLKLASSKNA SNVITTRISN LLDELTRTNV IFNISLISPV MALVNSLQGL 180
181 SLQVSEIDNM EQVWKWFDET ISRVVKTPYK YVDMAKEYNY ISPFIMCLSE QWKYVDK
|
| Detection Method: | |
| Confidence: | 2.59 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [694-1764] |
1 11 21 31 41 51
| | | | | |
1 SGNPEFLIKW LILFLRNMIF IGEDHIGIDK LVKNVFPEVS DHDVNIYLKL DSFEENIKKT 60
61 NSSNSLISSM KSSSFFQYIS ALPSKNLMNI SRLPVNKLDA AGILFRVQLL VEDDSVVYDN 120
121 WFEATACELT GKIASYMVTD TEFPIIKVLE RYINFALPKL AIEKRNALLM KKSRFMCNLI 180
181 GAVCFETGHQ LVEFREIIQK VVFSGENVEE YANYNELYQK EDVNAFLTSV SEYLSTSALT 240
241 SLLMCSTKLE STRNILQKLF NEGKTIKISL VKNILNKAAN EDPASIKEVN ISLAKFFEEN 300
301 KVCVDASSDP MGKLSLSETT SLINSFVSSD LNYLVLKAFY RWEHFSFPSF IPSIWRIKDS 360
361 PLLSIVTTAA LFKHMQDKDF SAFAHETISK YGNEIAKSTY TTSKSEIFDE ILNMITTYID 420
421 FYDETKRNEI LKCVLSQSDH KYHAATVRYI AAHNNFTYPG VETWLHKTLL YLTKYLSERK 480
481 VISNSFFELL RAMAELLKLE EVPNKLNVKI INSQLEAILG SEWIKQIKVL EYVIVLIFCV 540
541 SKKSIQSQRM VQLLLSNDSY SSIMIKDNDE DSSYRKFLST MILFSLFSID PVVNSTPIVQ 600
601 EKLLTFYSGT ISSNDKLILK ILETIESHTA TSWTNMIFSW EFIKDEEEEI LEAIGDTRLI 660
661 TKEREGLILT LQKNMIKKSI DRYVLERPQV PELYTDSNTN NYDATTRCDL VKKYYDDTER 720
721 SGVDMYDPLF LLLLIIHNKE LVKMVKDDEG NVTYRYEFEN FLDCKIFQFI ICSLSDCHTV 780
781 ANISYEHLSN LASSLEKKTA QMNLEKQITS KDNERKESDS DLIKYNSIYQ VLIKRILYQR 840
841 QQNQDPINPL IWFSISRIVD LLGSPTAPLH EKAYRWVLSN STIRSWDIPM VSDVMMSYNK 900
901 RQQDDNKKEI DMEIYYGELS WVLTTICKGI KTDEDYKMLE KKGVFEWLLN LINMPYLKER 960
961 LRELIYFIFY KVQRVADDGG LNLISRNGIV SFFEVLNNNI KSRLPQDDIL NNIGTLRNEN1020
1021 RGTLNTTLRL AQEQNGIEKL LLGYNELVKS QKRLILWTEG DSDNVVKRLR K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1288-1511] |
1 11 21 31 41 51
| | | | | |
1 STPIVQEKLL TFYSGTISSN DKLILKILET IESHTATSWT NMIFSWEFIK DEEEEILEAI 60
61 GDTRLITKER EGLILTLQKN MIKKSIDRYV LERPQVPELY TDSNTNNYDA TTRCDLVKKY 120
121 YDDTERSGVD MYDPLFLLLL IIHNKELVKM VKDDEGNVTY RYEFENFLDC KIFQFIICSL 180
181 SDCHTVANIS YEHLSNLASS LEKKTAQMNL EKQITSKDNE RKES
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1512-1764] |
1 11 21 31 41 51
| | | | | |
1 DSDLIKYNSI YQVLIKRILY QRQQNQDPIN PLIWFSISRI VDLLGSPTAP LHEKAYRWVL 60
61 SNSTIRSWDI PMVSDVMMSY NKRQQDDNKK EIDMEIYYGE LSWVLTTICK GIKTDEDYKM 120
121 LEKKGVFEWL LNLINMPYLK ERLRELIYFI FYKVQRVADD GGLNLISRNG IVSFFEVLNN 180
181 NIKSRLPQDD ILNNIGTLRN ENRGTLNTTL RLAQEQNGIE KLLLGYNELV KSQKRLILWT 240
241 EGDSDNVVKR LRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
