YRC Public Data Repository - Protein Structure Prediction

Protein:	DAN1
Organism:	Saccharomyces cerevisiae
Length:	298 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAN1.

Description	E-value	Query Range	Subject Range
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1	8.0E-45	[2..298]	[841..1131]
gi\|40217297, gi\|... - gi\|4808164\|emb\|CAB42795.1\| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...	9.0E-39	[1..295]	[1565..1876]
gi\|4808166 - gi\|4808166\|emb\|CAB42797.1\| largest subunit of the RNA polymerase II complex [Drosophila pseudoobscur...	1.0E-36	[2..295]	[1478..1798]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	1.0E-36	[6..272]	[1461..1743]
gi\|4808162 - gi\|4808162\|emb\|CAB42796.1\| largest subunit of the RNA polymerase II complex [Drosophila madeirensis]	8.0E-33	[2..295]	[1556..1876]
gi\|9587193, gi\|9... - gi\|9587199\|gb\|AAF89203.1\|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura], gi\|95...	8.0E-33	[2..295]	[1556..1876]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-30	[1..295]	[108..407]

Back

Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRISILAVA AALVASATAA SVTTTLSPYD ERVNLIELAV YVSDIGAHLS EYYAFQALHK  60
   61 TETYPPEIAK AVFAGGDFTT MLTGISGDEV TRMITGVPWY STRLMGAISE ALANGGIATA 120
  121 VPASTTEASS TSTSEASSAA TESSSSSESS AETSSNAAST QATVSSESSS AASTIASSAE 180
  181 SSVASSVASS VASSASFANT TAPVSSTSSI SVTPVVQNGT DSTVTKTQAS TVETTITSCS 240
  241 NNVCSTVTKP VSSKAQSTAT SVTSSASRVI DVTTNGANKF NNGVFGAAAI AGAAALLL

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	14.98
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits