YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM8
Organism:	Saccharomyces cerevisiae
Length:	87 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM8.

Description	E-value	Query Range	Subject Range
gi\|114689461, gi... - gi\|114689461\|ref\|XP_001139457.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog A ... ENSCJAT00000009066 - null gi\|109131553 - gi\|109131553\|ref\|XP_001092722.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8... TIMM8A - translocase of inner mitochondrial membrane 8 homolog A (yeast)	9.0E-20	[1..87]	[1..85]
TIM9_MESCR - Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM...	9.0E-20	[1..85]	[1..84]
TIM8B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Mus musculus GN=Timm8b PE=1 SV=1 TIM8B_RAT - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Rattus norvegicus GN=Timm8b PE=3 S...	1.0E-19	[9..85]	[1..76]
TIM9_ORYSA, IM09... - (Q9XGX7) Mitochondrial import inner membrane translocase subunit Tim9, (Q9XGX7) Mitochondrial import...	2.0E-19	[1..85]	[1..84]
tim8 - TIM22 inner membrane protein import complex subunit Tim8 TIM8_SCHPO - Mitochondrial import inner membrane translocase subunit tim8 OS=Schizosaccharomyces pombe (strain 97...	7.0E-19	[1..87]	[1..86]
TIM8A_TAKRU - Mitochondrial import inner membrane translocase subunit Tim8 A OS=Takifugu rubripes GN=timm8a PE=3 S...	2.0E-18	[9..87]	[1..78]
gi\|151945200 - gi\|151945200\|gb\|EDN63451.1\| translocase of the inner membrane [Saccharomyces cerevisiae YJM789] TIM8_YEAST - Mitochondrial import inner membrane translocase subunit TIM8 OS=Saccharomyces cerevisiae (strain ATC... TIM8 - Mitochondrial intermembrane space protein, forms a complex with Tim13p that delivers a subset of hyd... gi\|190409606 - gi\|190409606\|gb\|EDV12871.1\| mitochondrial import inner membrane translocase subunit TIM8 [Saccharomy...	4.0E-18	[1..87]	[1..87]
TIM9_ARATH - Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV...	4.0E-18	[1..85]	[1..84]
TIM8_NEUCR - Mitochondrial import inner membrane translocase subunit tim8 OS=Neurospora crassa (strain ATCC 24698... TIM8_NEUCR, IM08... - Mitochondrial import inner membrane translocase subunit tim-8 OS=Neurospora crassa GN=tim-8 PE=1 SV=...	5.0E-18	[1..85]	[1..85]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSTSDLA SLDDTSKKEI ATFLEGENSK QKVQMSIHQF TNICFKKCVE SVNDSNLSSQ  60
   61 EEQCLSNCVN RFLDTNIRIV NGLQNTR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.958607
Match:	PF02953
Description:	Tim10/DDP family zinc finger

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits