YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS5
Organism:	Saccharomyces cerevisiae
Length:	225 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS5.

Description	E-value	Query Range	Subject Range
gi\|16566728 - gi\|16566728\|gb\|AAL26581.1\|AF429979_1 ribosomal protein S5 [Spodoptera frugiperda]	2.0E-81	[1..225]	[1..219]
gi\|151945188 - gi\|151945188\|gb\|EDN63439.1\| ribosomal protein S5 [Saccharomyces cerevisiae YJM789] ORFP:12748 - YJR123W, Contig c309 12321-12998 gi\|207343771 - gi\|207343771\|gb\|EDZ71128.1\| YJR123Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409595 - gi\|190409595\|gb\|EDV12860.1\| ribosomal protein S5 [Saccharomyces cerevisiae RM11-1a] RS5_YEAST - 40S ribosomal protein S5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS5 PE=1 SV=3 RPS5 - Protein component of the small (40S) ribosomal subunit, the least basic of the non-acidic ribosomal ...	5.0E-78	[1..225]	[1..225]
gi\|109126282, gi... - gi\|109126284\|ref\|XP_001097103.1\| PREDICTED: similar to ribosomal protein S5 isoform 2 [Macaca mulatt... CCDS12978.1_1 - null gi\|123981762, gi... - gi\|61359863\|gb\|AAX41778.1\| ribosomal protein S5 [synthetic construct], gi\|123996585\|gb\|ABM85894.1\| r... RPS5 - ribosomal protein S5 ENSCJAT00000000563 - null gi\|194216174 - gi\|194216174\|ref\|XP_001495410.2\| PREDICTED: similar to ribosomal protein S5 [Equus caballus] gi\|114679433, gi... - gi\|114679433\|ref\|XP_001147216.1\| PREDICTED: similar to ribosomal protein S5 isoform 3 [Pan troglodyt... gi\|73946777, gi\|... - gi\|73946777\|ref\|XP_861863.1\| PREDICTED: similar to ribosomal protein S5 isoform 5 [Canis familiaris]... RS5_BOVIN - 40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3 tr\|G1TFM5\|G1TFM5... - pep:novel scaffold:oryCun2:GL018763:1362295:1367921:1 gene:ENSOCUG00000024505 transcript:ENSOCUT0000...	8.0E-78	[25..225]	[1..204]
gi\|15294021 - gi\|15294021\|gb\|AAK95187.1\|AF402813_1 40S ribosomal protein S5 [Ictalurus punctatus]	9.0E-78	[25..225]	[1..203]
gi\|74139334, gi\|... - gi\|74214786\|dbj\|BAE31228.1\| unnamed protein product [Mus musculus], gi\|74211025\|dbj\|BAE37616.1\| unna...	2.0E-77	[25..225]	[1..204]
gi\|194188984, gi... - gi\|195480955\|ref\|XP_002101460.1\| GE15619 [Drosophila yakuba], gi\|194188984\|gb\|EDX02568.1\| GE15619 [D... gi\|194124190, gi... - gi\|195351650\|ref\|XP_002042347.1\| GM13336 [Drosophila sechellia], gi\|194124190\|gb\|EDW46233.1\| GM13336... gi\|220960346, gi... - gi\|220960346\|gb\|ACL92709.1\| RpS5a-PA [synthetic construct], gi\|220944650\|gb\|ACL84868.1\| RpS5a-PA [sy... FBpp0309958, FBp... - The gene Ribosomal protein S5a is referred to in FlyBase by the symbol Dmel\RpS5a (CG8922, FBgn00025... gi\|190649181, gi... - gi\|194891689\|ref\|XP_001977532.1\| GG18202 [Drosophila erecta], gi\|190649181\|gb\|EDV46459.1\| GG18202 [D...	4.0E-77	[3..225]	[14..228]
gi\|57137 - gi\|57137\|emb\|CAA41379.1\| ribosomal protein S5 [Rattus rattus] RS5_RAT - 40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=1 SV=3	3.0E-75	[25..225]	[1..204]
RS5_PODCA - 40S ribosomal protein S5 OS=Podocoryna carnea GN=RPS5 PE=2 SV=1	9.0E-75	[16..225]	[1..210]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTEAPVEV QEDFEVVEEF TPVVLATPIP EEVQQAQTEI KLFNKWSFEE VEVKDASLVD  60
   61 YVQVRQPIFV AHTAG

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	8.72
Match:	1iqvA
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [76-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYANKRFRKA QCPIIERLTN SLMMNGRNNG KKLKAVRIIK HTLDIINVLT DQNPIQVVVD  60
   61 AITNTGPRED TTRVGGGGAA RRQAVDVSPL RRVNQAIALL TIGAREAAFR NIKTIAETLA 120
  121 EELINAAKGS STSYAIKKKD ELERVAKSNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	767.758605
Match:	1k5xG_
Description:	No description for 1k5xG_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits