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View Structure Prediction Details

Protein: URA8
Organism: Saccharomyces cerevisiae
Length: 564 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URA8.

Description E-value Query
Range		 Subject
Range
gi|15221525 - gi|15221525|ref|NP_174368.1| CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis tha...
 0.0 [1..560] [1..548]
URA8 - Minor CTP synthase isozyme (see also URA7), catalyzes the ATP-dependent transfer of the amide nitrog...
 0.0 [1..564] [1..564]
PYRG1_MOUSE - CTP synthase 1 OS=Mus musculus GN=Ctps1 PE=1 SV=2
 0.0 [1..561] [1..550]
gi|14495609 - gi|14495609|gb|AAH09408.1| CTP synthase [Homo sapiens]
 0.0 [1..561] [1..550]
PYRG_BACHD - CTP synthase OS=Bacillus halodurans GN=pyrG PE=3 SV=1
PYRG_BACHD - CTP synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)...
 0.0 [2..561] [4..532]
gi|221325199 - gi|221325199|ref|ZP_03606493.1| CTP synthetase [Bacillus subtilis subsp. subtilis str. SMY]
gi|221320915 - gi|221320915|ref|ZP_03602209.1| CTP synthetase [Bacillus subtilis subsp. subtilis str. JH642]
gi|221316004 - gi|221316004|ref|ZP_03597809.1| CTP synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610]
PYRG_BACSU - CTP synthase OS=Bacillus subtilis GN=pyrG PE=3 SV=1
PYRG_BACSU - CTP synthase OS=Bacillus subtilis (strain 168) GN=pyrG PE=3 SV=1
 0.0 [2..560] [3..530]
PYRG_CLOAB - CTP synthase OS=Clostridium acetobutylicum GN=pyrG PE=3 SV=1
PYRG_CLOAB - CTP synthase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-...
 0.0 [2..564] [4..535]

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Predicted Domain #1
Region A:
Residues: [1-208] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYVVVSGGV ISGIGKGVLA SSTGMLLKTL GLKVTSIKID PYMNIDAGTM SPLEHGECFV  60
   61 LDDGGETDLD LGNYERYLGI TLSRDHNITT GKIYSHVISR ERRGDYLGKT VQIVPHLTNA 120
  121 IQDWIQRVSK IPVDDTGLEP DVCIIELGGT VGDIESAPFV EALRQFQFEV GRENFALIHV 180
  181 SLVPVIHGEQ KTKPTQAAIK DLRSLGLI

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.75
Match: 1cp2A
Description: Nitrogenase iron protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [209-564] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDMIACRCSE ELNRSTIDKI AMFCHVGPEQ VVNVHDVNST YHVPLLLLKQ HMIDYLHSRL  60
   61 KLGEVPLTLE DKERGSQLLT NWENMTKNLD DSDDVVKIAL VGKYTNLKDS YLSVTKSLEH 120
  121 ASMKCRRQLE ILWVEASNLE PETQEVDKNK FHDSWNKLSS ADGILVPGGF GTRGIEGMIL 180
  181 AAKWARESGV PFLGVCLGLQ VAAIEFARNV IGRPNSSSTE FLDETLLAPE DQVVIYMPEI 240
  241 DKEHMGGTMR LGLRPTIFQP NSEWSNIRKL YGEVNEVHER HRHRYEINPK IVNDMESRGF 300
  301 IFVGKDETGQ RCEIFELKGH PYYVGTQYHP EYTSKVLEPS RPFWGLVAAA PAHLVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.522879
Match: 1bxrB_
Description: Carbamoyl phosphate synthetase, small subunit N-terminal domain; Carbamoyl phosphate synthetase, small subunit C-terminal domain
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle