| Protein: | JSN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1091 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JSN1.
| Description | E-value | Query Range |
Subject Range |
|
|
622.0 | [0..232] | [1091..27] |
|
|
560.0 | [0..36] | [927..92] |
|
Region A: Residues: [1-299] |
1 11 21 31 41 51
| | | | | |
1 MDKSKQMNIN NLSNIPEVID PGITIPIYEE EYENNGESNS QLQQQPQKLG SYRSRAGKFS 60
61 NTLSNLLPSI SAKLHHSKKN SHGKNGAEFS SSNNSSQSTV ASKTPRASPS RSKMMESSID 120
121 GVTMDRPGSL TPPQDMEKLV HFPDSSNNFL IPAPRGSSDS FNLPHQISRT RNNTMSSQIT 180
181 SISSIAPKPR TSSGIWSSNA SANDPMQQHL LQQLQPTTSN NTTNSNTLND YSTKTAYFDN 240
241 MVSTSGSQMA DNKMNTNNLA IPNSVWSNTR QRSQSNASSI YTDAPLYEQP ARASISSHY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [300-448] |
1 11 21 31 41 51
| | | | | |
1 TIPTQESPLI ADEIDPQSIN WVTMDPTVPS INQISNLLPT NTISISNVFP LQHQQPQLNN 60
61 AINLTSTSLA TLCSKYGEVI SARTLRNLNM ALVEFSSVES AVKALDSLQG KEVSMIGAPS 120
121 KISFAKILPM HQQPPQFLLN SQGLPLGLE
|
| Detection Method: | |
| Confidence: | 13.69 |
| Match: | |
| Description: | No description for 1h2tZ was found. |
|
Region A: Residues: [449-566] |
1 11 21 31 41 51
| | | | | |
1 NNNLQPQPLL QEQLFNGAVT FQQQGNVSIP VFNQQSQQSQ HQNHSSGSAG FSNVLHGYNN 60
61 NNSMHGNNNN SANEKEQCPF PLPPPNVNEK EDLLREIIEL FEANSDEYQI NSLIKKSL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [567-691] |
1 11 21 31 41 51
| | | | | |
1 NHKGTSDTQN FGPLPEPLSG REFDPPKLRE LRKSIDSNAF SDLEIEQLAI AMLDELPELS 60
61 SDYLGNTIVQ KLFEHSSDII KDIMLRKTSK YLTSMGVHKN GTWACQKMIT MAHTPRQIMQ 120
121 VTQGV
|
| Detection Method: | |
| Confidence: | 185.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [692-792] |
1 11 21 31 41 51
| | | | | |
1 KDYCTPLIND QFGNYVIQCV LKFGFPWNQF IFESIIANFW VIVQNRYGAR AVRACLEAHD 60
61 IVTPEQSIVL SAMIVTYAEY LSTNSNGALL VTWFLDTSVL P
|
| Detection Method: | |
| Confidence: | 185.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [793-942] |
1 11 21 31 41 51
| | | | | |
1 NRHSILAPRL TKRIVELCGH RLASLTILKV LNYRGDDNAR KIILDSLFGN VNAHDSSPPK 60
61 ELTKLLCETN YGPTFVHKVL AMPLLEDDLR AHIIKQVRKV LTDSTQIQPS RRLLEEVGLA 120
121 SPSSTHNKTK QQQQQHHNSS ISHMFATPDT
|
| Detection Method: | |
| Confidence: | 185.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [943-1091] |
1 11 21 31 41 51
| | | | | |
1 SGQHMRGLSV SSVKSGGSKH TTMNTTTTNG SSASTLSPGQ PLNANSNSSM GYFSYPGVFP 60
61 VSGFSGNASN GYAMNNDDLS SQFDMLNFNN GTRLSLPQLS LTNHNNTTME LVNNVGSSQP 120
121 HTNNNNNNNN TNYNDDNTVF ETLTLHSAN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
