Protein: | GRR1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1151 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRR1.
Description | E-value | Query Range |
Subject Range |
|
444.0 | [0..63] | [962..389] |
|
412.0 | [0..191] | [990..164] |
|
397.0 | [0..112] | [940..90] |
|
392.0 | [0..112] | [940..90] |
|
391.0 | [0..64] | [940..4] |
Region A: Residues: [1-96] |
1 11 21 31 41 51 | | | | | | 1 MDQDNNNHND SNRLHPPDIH PNLGPQLWLN SSGDFDDNNN NNNNNNNNNS TRPQMPSRTR 60 61 ETATSERNAS EVRDATLNNI FRFDSIQRET LLPTNN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.235 | a.21.1 | HMG-box |
View | Download | 0.212 | a.4.12 | TrpR-like |
View | Download | 0.212 | a.4.12 | TrpR-like |
View | Download | 0.203 | d.58.4 | Dimeric alpha+beta barrel |
View | Download | 0.203 | d.58.4 | Dimeric alpha+beta barrel |
Region A: Residues: [97-269] |
1 11 21 31 41 51 | | | | | | 1 GQPLNQNFSL TFQPQQQTNA LNGIDINTVN TNLMNGVNVQ IDQLNRLLPN LPEEERKQIH 60 61 EFKLIVGKKI QEFLVVIEKR RKKILNEIEL DNLKLKELRI DNSPQAISYL HKLQRMRLRA 120 121 LETENMEIRN LRLKILTIIE EYKKSLYAYC HSKLRGQQVE NPTDNFIIWI NSI |
Detection Method: | |
Confidence: | 4.39794 |
Match: | 1k15A_ |
Description: | No description for 1k15A_ was found. |
Region A: Residues: [270-332] |
1 11 21 31 41 51 | | | | | | 1 DTTESSDLKE GLQDLSRYSR QFINNVLSNP SNQNICTSVT RRSPVFALNM LPSEILHLIL 60 61 DKL |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.698 | a.190.1 | Description not found. |
View | Download | 0.677 | a.159.2 | FF domain |
View | Download | 0.639 | a.144.1 | PABC (PABP) domain |
View | Download | 0.639 | a.144.1 | PABC (PABP) domain |
View | Download | 0.581 | a.178.1 | Soluble domain of poliovirus core protein 3a |
View | Download | 0.581 | a.178.1 | Soluble domain of poliovirus core protein 3a |
View | Download | 0.564 | a.4.1 | Homeodomain-like |
View | Download | 0.561 | a.50.1 | Anaphylotoxins (complement system) |
View | Download | 0.525 | a.65.1 | Annexin |
Region A: Residues: [333-424] |
1 11 21 31 41 51 | | | | | | 1 NQKYDIVKFL TVSKLWAEII VKILYYRPHI NKKSQLDLFL RTMKLTSEET VFNYRLMIKR 60 61 LNFSFVGDYM HDTELNYFVG CKNLERLTLV FC |
Detection Method: | |
Confidence: | 15.522879 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [425-477] |
1 11 21 31 41 51 | | | | | | 1 KHITSVPISA VLRGCKFLQS VDITGIRDVS DDVFDTLATY CPRVQGFYVP QAR |
Detection Method: | |
Confidence: | 15.522879 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [478-529] |
1 11 21 31 41 51 | | | | | | 1 NVTFDSLRNF IVHSPMLKRI KITANNNMND ELVELLANKC PLLVEVDITL SP |
Detection Method: | |
Confidence: | 15.522879 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [530-648] |
1 11 21 31 41 51 | | | | | | 1 NVTDSSLLKL LTRLVQLREF RITHNTNITD NLFQELSKVV DDMPSLRLID LSGCENITDK 60 61 TIESIVNLAP KLRNVFLGKC SRITDASLFQ LSKLGKNLQT VHFGHCFNIT DNGVRALFH |
Detection Method: | |
Confidence: | 15.522879 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [649-754] |
1 11 21 31 41 51 | | | | | | 1 SCTRIQYVDF ACCTNLTNRT LYELADLPKL KRIGLVKCTQ MTDEGLLNMV SLRGRNDTLE 60 61 RVHLSYCSNL TIYPIYELLM SCPRLSHLSL TAVPSFLRPD ITMYCR |
Detection Method: | |
Confidence: | 15.522879 |
Match: | 1dfjI |
Description: | Ribonuclease inhibitor |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [755-1045] |
1 11 21 31 41 51 | | | | | | 1 PAPSDFSENQ RQIFCVFSGK GVHKLRHYLV NLTSPAFGPH VDVNDVLTKY IRSKNLIFNG 60 61 ETLEDALRRI ITDLNQDSAA IIAATGLNQI NGLNNDFLFQ NINFERIDEV FSWYLNTFDG 120 121 IRMSSEEVNS LLLQVNKTFC EDPFSDVDDD QDYVVAPGVN REINSEMCHI VRKFHELNDH 180 181 IDDFEVNVAS LVRVQFQFTG FLLHEMTQTY MQMIELNRQI CLVQKTVQES GNIDYQKGLL 240 241 IWRLLFIDKF IMVVQKYKLS TVVLRLYLKD NITLLTRQRE LLIAHQRSAW N |
Detection Method: | |
Confidence: | 10.0 |
Match: | 1g9uA |
Description: | Leucine rich effector protein YopM |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [1046-1151] |
1 11 21 31 41 51 | | | | | | 1 NNNDNDANRN ANNIVNIVSD AGANDTSNNE TNNGNDDNET ENPNFWRQFG NRMQISPDQM 60 61 RNLQMGLRNQ NMVRNNNNNT IDESMPDTAI DSQMDEASGT PDEDML |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.