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View Structure Prediction Details

Protein: GRR1
Organism: Saccharomyces cerevisiae
Length: 1151 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRR1.

Description E-value Query
Range
Subject
Range
gi|12597786 - gi|12597786|gb|AAG60098.1|AC073178_9 disease resistance protein, putative [Arabidopsis thaliana]
444.0 [0..63] [962..389]
MSL1_ORYSJ - Leucine-rich repeat receptor protein kinase MSL1 OS=Oryza sativa subsp. japonica GN=MSL1 PE=2 SV=1
412.0 [0..191] [990..164]
gi|7488988 - pir||T30553 disease resistance protein Hcr2-5D - tomato
gi|3894393 - gi|3894393|gb|AAC78596.1| Hcr2-5D [Lycopersicon esculentum]
397.0 [0..112] [940..90]
gi|60327200 - gi|60327200|gb|AAX19023.1| Hcr2-p1.1 [Lycopersicon pimpinellifolium]
392.0 [0..112] [940..90]
gi|3894387 - gi|3894387|gb|AAC78593.1| Hcr2-0B [Lycopersicon esculentum]
391.0 [0..64] [940..4]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQDNNNHND SNRLHPPDIH PNLGPQLWLN SSGDFDDNNN NNNNNNNNNS TRPQMPSRTR  60
   61 ETATSERNAS EVRDATLNNI FRFDSIQRET LLPTNN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.235 a.21.1 HMG-box
View Download 0.212 a.4.12 TrpR-like
View Download 0.212 a.4.12 TrpR-like
View Download 0.203 d.58.4 Dimeric alpha+beta barrel
View Download 0.203 d.58.4 Dimeric alpha+beta barrel

Predicted Domain #2
Region A:
Residues: [97-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQPLNQNFSL TFQPQQQTNA LNGIDINTVN TNLMNGVNVQ IDQLNRLLPN LPEEERKQIH  60
   61 EFKLIVGKKI QEFLVVIEKR RKKILNEIEL DNLKLKELRI DNSPQAISYL HKLQRMRLRA 120
  121 LETENMEIRN LRLKILTIIE EYKKSLYAYC HSKLRGQQVE NPTDNFIIWI NSI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 1k15A_
Description: No description for 1k15A_ was found.

Predicted Domain #3
Region A:
Residues: [270-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTTESSDLKE GLQDLSRYSR QFINNVLSNP SNQNICTSVT RRSPVFALNM LPSEILHLIL  60
   61 DKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.698 a.190.1 Description not found.
View Download 0.677 a.159.2 FF domain
View Download 0.639 a.144.1 PABC (PABP) domain
View Download 0.639 a.144.1 PABC (PABP) domain
View Download 0.581 a.178.1 Soluble domain of poliovirus core protein 3a
View Download 0.581 a.178.1 Soluble domain of poliovirus core protein 3a
View Download 0.564 a.4.1 Homeodomain-like
View Download 0.561 a.50.1 Anaphylotoxins (complement system)
View Download 0.525 a.65.1 Annexin

Predicted Domain #4
Region A:
Residues: [333-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQKYDIVKFL TVSKLWAEII VKILYYRPHI NKKSQLDLFL RTMKLTSEET VFNYRLMIKR  60
   61 LNFSFVGDYM HDTELNYFVG CKNLERLTLV FC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1dfjI
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [425-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHITSVPISA VLRGCKFLQS VDITGIRDVS DDVFDTLATY CPRVQGFYVP QAR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1dfjI
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [478-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVTFDSLRNF IVHSPMLKRI KITANNNMND ELVELLANKC PLLVEVDITL SP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1dfjI
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #7
Region A:
Residues: [530-648]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVTDSSLLKL LTRLVQLREF RITHNTNITD NLFQELSKVV DDMPSLRLID LSGCENITDK  60
   61 TIESIVNLAP KLRNVFLGKC SRITDASLFQ LSKLGKNLQT VHFGHCFNIT DNGVRALFH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1dfjI
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #8
Region A:
Residues: [649-754]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCTRIQYVDF ACCTNLTNRT LYELADLPKL KRIGLVKCTQ MTDEGLLNMV SLRGRNDTLE  60
   61 RVHLSYCSNL TIYPIYELLM SCPRLSHLSL TAVPSFLRPD ITMYCR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 1dfjI
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #9
Region A:
Residues: [755-1045]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAPSDFSENQ RQIFCVFSGK GVHKLRHYLV NLTSPAFGPH VDVNDVLTKY IRSKNLIFNG  60
   61 ETLEDALRRI ITDLNQDSAA IIAATGLNQI NGLNNDFLFQ NINFERIDEV FSWYLNTFDG 120
  121 IRMSSEEVNS LLLQVNKTFC EDPFSDVDDD QDYVVAPGVN REINSEMCHI VRKFHELNDH 180
  181 IDDFEVNVAS LVRVQFQFTG FLLHEMTQTY MQMIELNRQI CLVQKTVQES GNIDYQKGLL 240
  241 IWRLLFIDKF IMVVQKYKLS TVVLRLYLKD NITLLTRQRE LLIAHQRSAW N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1g9uA
Description: Leucine rich effector protein YopM
Matching Structure (courtesy of the PDB):

Predicted Domain #10
Region A:
Residues: [1046-1151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNNDNDANRN ANNIVNIVSD AGANDTSNNE TNNGNDDNET ENPNFWRQFG NRMQISPDQM  60
   61 RNLQMGLRNQ NMVRNNNNNT IDESMPDTAI DSQMDEASGT PDEDML

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle