YRC Public Data Repository - Protein Structure Prediction

Protein:	RPA12
Organism:	Saccharomyces cerevisiae
Length:	125 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA12.

Description	E-value	Query Range	Subject Range
gi\|8923204, gi\|7... - gi\|8923204\|ref\|NP_060185.1\| zinc finger protein 3 isoform 1 [Homo sapiens], gi\|7020166\|dbj\|BAA91019....	2.0E-65	[1..125]	[188..325]
gi\|9665238, gi\|2... - gi\|9665238\|ref\|NP_062566.1\| zinc finger protein 386 (Kruppel-like) [Rattus norvegicus], gi\|2810991\|g...	7.0E-59	[1..125]	[391..523]
ZKSC3_MOUSE - Zinc finger protein with KRAB and SCAN domains 3 OS=Mus musculus GN=Zkscan3 PE=1 SV=1	2.0E-57	[3..125]	[308..438]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVGSLIFC LDCGDLLENP NAVLGSNVEC SQCKAIYPKS QFSNLKVVTT TADDAFPSSL  60
   61 RAKKSVVKTS LKKNELKDGA TIKEKCPQCG NEEMNYHTLQ LRSADEGATV FYTCTSCGYK 120
  121 FRTNN

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Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1meyG_
Description:	Designed zinc finger protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits