Protein: | NUP85 |
Organism: | Saccharomyces cerevisiae |
Length: | 744 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP85.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..744] | [1..744] |
|
0.0 | [69..696] | [36..643] |
|
0.0 | [175..700] | [163..647] |
|
0.0 | [137..691] | [100..605] |
|
0.0 | [99..697] | [3..559] |
|
0.0 | [180..674] | [166..655] |
|
0.0 | [139..696] | [100..605] |
|
0.0 | [135..696] | [96..605] |
Region A: Residues: [1-134] |
1 11 21 31 41 51 | | | | | | 1 MTIDDSNRLL MDVDQFDFLD DGTAQLSNNK TDEEEQLYKR DPVSGAILVP MTVNDQPIEK 60 61 NGDKMPLKFK LGPLSYQNMA FITAKDKYKL YPVRIPRLDT SKEFSAYVSG LFEIYRDLGD 120 121 DRVFNVPTIG VVNS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.562 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
View | Download | 0.586 | b.1.10 | Clathrin adaptor appendage domain |
View | Download | 0.628 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
View | Download | 0.628 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
View | Download | 0.589 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
View | Download | 0.586 | b.1.10 | Clathrin adaptor appendage domain |
View | Download | 0.563 | d.58.47 | Hypothetical protein VC0424 |
View | Download | 0.563 | d.58.47 | Hypothetical protein VC0424 |
View | Download | 0.562 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
View | Download | 0.539 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
View | Download | 0.529 | b.55.1 | PH domain-like |
View | Download | 0.511 | d.198.1 | Type III secretory system chaperone |
View | Download | 0.451 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.448 | d.130.1 | S-adenosylmethionine synthetase |
View | Download | 0.441 | b.60.1 | Lipocalins |
View | Download | 0.433 | a.24.11 | Bacterial GAP domain |
View | Download | 0.428 | d.109.1 | Actin depolymerizing proteins |
View | Download | 0.425 | d.109.1 | Actin depolymerizing proteins |
View | Download | 0.415 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
View | Download | 0.412 | d.155.1 | Pyruvoyl-dependent histidine and arginine decarboxylases |
View | Download | 0.394 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.392 | c.23.5 | Flavoproteins |
View | Download | 0.380 | d.110.4 | SNARE-like |
View | Download | 0.380 | d.58.33 | Formylmethanofuran:tetrahydromethanopterin formyltransferase |
View | Download | 0.376 | d.233.1 | Inhibitor of vertebrate lysozyme, Ivy |
View | Download | 0.363 | c.23.1 | CheY-like |
View | Download | 0.362 | d.109.1 | Actin depolymerizing proteins |
View | Download | 0.357 | c.51.1 | Anticodon-binding domain of Class II aaRS |
View | Download | 0.354 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
View | Download | 0.353 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.330 | d.109.1 | Actin depolymerizing proteins |
View | Download | 0.323 | a.29.2 | Bromodomain |
View | Download | 0.319 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
View | Download | 0.318 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
View | Download | 0.317 | b.63.1 | Oncogene products |
View | Download | 0.304 | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
View | Download | 0.304 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
View | Download | 0.303 | c.47.1 | Thioredoxin-like |
View | Download | 0.298 | d.65.1 | Hedgehog/DD-pepidase |
View | Download | 0.284 | a.4.12 | TrpR-like |
View | Download | 0.278 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
View | Download | 0.272 | c.49.1 | Pyruvate kinase, C-terminal domain |
View | Download | 0.269 | c.97.1 | Cytidine deaminase-like |
View | Download | 0.263 | b.60.1 | Lipocalins |
View | Download | 0.253 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
View | Download | 0.233 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
View | Download | 0.232 | a.1.1 | Globin-like |
View | Download | 0.225 | c.50.1 | Macro domain-like |
View | Download | 0.222 | c.52.1 | Restriction endonuclease-like |
View | Download | 0.218 | d.58.12 | eEF-1beta-like |
View | Download | 0.216 | a.24.15 | FAD-dependent thiol oxidase |
View | Download | 0.214 | d.58.18 | Regulatory domain in the aminoacid metabolism |
View | Download | 0.204 | d.95.2 | Homing endonucleases |
Region A: Residues: [135-678] |
1 11 21 31 41 51 | | | | | | 1 NFAKEHNATV NLAMEAILNE LEVFIGRVKD QDGRVNRFYE LEESLTVLNC LRTMYFILDG 60 61 QDVEENRSEF IESLLNWINR SDGEPDEEYI EQVFSVKDST AGKKVFETQY FWKLLNQLVL 120 121 RGLLSQAIGC IERSDLLPYL SDTCAVSFDA VSDSIELLKQ YPKDSSSTFR EWKNLVLKLS 180 181 QAFGSSATDI SGELRDYIED FLLVIGGNQR KILQYSRTWY ESFCGFLLYY IPSLELSAEY 240 241 LQMSLEANVV DITNDWEQPC VDIISGKIHS ILPVMESLDS CTAAFTAMIC EAKGLIENIF 300 301 EGEKNSDDYS NEDNEMLEDL FSYRNGMASY MLNSFAFELC SLGDKELWPV AIGLIALSAT 360 361 GTRSAKKMVI AELLPHYPFV TNDDIEWMLS ICVEWRLPEI AKEIYTTLGN QMLSAHNIIE 420 421 SIANFSRAGK YELVKSYSWL LFEASCMEGQ KLDDPVLNAI VSKNSPAEDD VIIPQDILDC 480 481 VVTNSMRQTL APYAVLSQFY ELRDREDWGQ ALRLLLLLIE FPYLPKHYLV LLVAKFLYPI 540 541 FLLD |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [679-744] |
1 11 21 31 41 51 | | | | | | 1 DKKLMDEDSV ATVIEVIETK WDDADEKSSN LYETIIEADK SLPSSMATLL KNLRKKLNFK 60 61 LCQAFM |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.747 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.746 | a.4.1 | Homeodomain-like |
View | Download | 0.750 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
View | Download | 0.725 | a.118.11 | Cytochrome c oxidase subunit E |
View | Download | 0.707 | a.159.2 | FF domain |
View | Download | 0.693 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.656 | a.65.1 | Annexin |
View | Download | 0.631 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
View | Download | 0.627 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
View | Download | 0.604 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
View | Download | 0.586 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.573 | a.4.1 | Homeodomain-like |
View | Download | 0.556 | a.64.1 | Saposin |
View | Download | 0.551 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.551 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.519 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.518 | a.118.8 | TPR-like |
View | Download | 0.507 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
View | Download | 0.499 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
View | Download | 0.498 | a.4.1 | Homeodomain-like |
View | Download | 0.490 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.489 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.479 | a.46.1 | Methionine synthase domain |
View | Download | 0.469 | a.153.1 | Nuclear receptor coactivator interlocking domain |
View | Download | 0.463 | a.17.1 | p8-MTCP1 |
View | Download | 0.458 | a.60.2 | RuvA domain 2-like |
View | Download | 0.454 | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.453 | a.4.1 | Homeodomain-like |
View | Download | 0.451 | a.51.1 | Cytochrome c oxidase subunit h |
View | Download | 0.444 | a.64.1 | Saposin |
View | Download | 0.440 | a.39.1 | EF-hand |
View | Download | 0.438 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
View | Download | 0.434 | a.21.1 | HMG-box |
View | Download | 0.428 | a.85.1 | Hemocyanin, N-terminal domain |
View | Download | 0.416 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.397 | a.4.1 | Homeodomain-like |
View | Download | 0.396 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.378 | a.56.1 | CO dehydrogenase ISP C-domain like |
View | Download | 0.369 | a.64.1 | Saposin |
View | Download | 0.360 | a.140.2 | SAP domain |
View | Download | 0.356 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
View | Download | 0.351 | a.4.8 | Ribosomal protein S18 |
View | Download | 0.337 | a.77.1 | DEATH domain |
View | Download | 0.336 | a.150.1 | Anti-sigma factor AsiA |
View | Download | 0.331 | a.4.1 | Homeodomain-like |
View | Download | 0.326 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.318 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
View | Download | 0.315 | a.4.1 | Homeodomain-like |
View | Download | 0.313 | a.12.1 | Kix domain of CBP (creb binding protein) |
View | Download | 0.313 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
View | Download | 0.308 | a.16.1 | S15/NS1 RNA-binding domain |
View | Download | 0.307 | a.4.1 | Homeodomain-like |
View | Download | 0.306 | a.157.1 | Skp1 dimerisation domain-like |
View | Download | 0.298 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
View | Download | 0.296 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
View | Download | 0.293 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.292 | a.61.1 | Retroviral matrix proteins |
View | Download | 0.291 | a.61.1 | Retroviral matrix proteins |
View | Download | 0.291 | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.290 | a.24.17 | Group V grass pollen allergen |
View | Download | 0.287 | a.7.7 | BAG domain |
View | Download | 0.287 | a.144.2 | Ribosomal protein L20 |
View | Download | 0.286 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
View | Download | 0.286 | a.60.1 | SAM/Pointed domain |
View | Download | 0.285 | a.23.5 | Hemolysin expression modulating protein HHA |
View | Download | 0.284 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
View | Download | 0.275 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.273 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
View | Download | 0.268 | d.54.1 | Enolase N-terminal domain-like |
View | Download | 0.267 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
View | Download | 0.267 | d.50.3 | PI-Pfui intein middle domain |
View | Download | 0.262 | a.28.1 | ACP-like |
View | Download | 0.258 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.254 | a.118.1 | ARM repeat |
View | Download | 0.251 | a.47.2 | t-snare proteins |
View | Download | 0.248 | a.76.1 | Iron-dependent represor protein, dimerization domain |
View | Download | 0.247 | a.28.3 | Retrovirus capsid protein C-terminal domain |
View | Download | 0.244 | a.118.9 | ENTH/VHS domain |
View | Download | 0.241 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
View | Download | 0.239 | f.15.1 | Small-conductance potassium channel |
View | Download | 0.237 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
View | Download | 0.235 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.229 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
View | Download | 0.229 | a.8.3 | Families 57/38 glycoside transferase middle domain |
View | Download | 0.227 | d.57.1 | DNA damage-inducible protein DinI |
View | Download | 0.223 | a.161.1 | beta-catenin-interacting protein ICAT |
View | Download | 0.221 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.219 | d.58.11 | EF-G/eEF-2 domains III and V |
View | Download | 0.218 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
View | Download | 0.209 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
View | Download | 0.209 | d.39.1 | Dynein light chain 8 (DLC8) |
View | Download | 0.209 | d.45.1 | ClpS-like |
View | Download | 0.202 | a.2.3 | Chaperone J-domain |
View | Download | 0.200 | a.60.9 | lambda integrase-like, N-terminal domain |