| Protein: | URB2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1174 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URB2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1120] | [1..1120] |
|
|
1.0E-69 | [1014..1173] | [1142..1317] |
|
|
1.0E-69 | [1014..1173] | [1133..1308] |
|
Region A: Residues: [1-267] |
1 11 21 31 41 51
| | | | | |
1 MGDLTEELSI PDNAQDLSKL LRSTSTKPHQ IAEIVSKFDK LETYFPKKEI FVLDLLIDRL 60
61 NNGNLDDFKT SEHTWIIFTR LLDAINDPIS IKKLLKKLKT VPVMIRTFFL WPKDKLLTRS 120
121 VSFIKAFFAI NDYLIVNFSV EESFQLLEHA INGLSSCPTT DFALSYLQDA CNLTHVDNIT 180
181 TTDNKIATCY CKHMLLPSLR YFAQTKNSAS SNQSFIRLSH FMGKFLLQPR IDYMKLNKKF 240
241 VQENASEITD DMAYYYFATF VTFLSKD
|
| Detection Method: |  |
| Confidence: | 1.6 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [268-336] |
1 11 21 31 41 51
| | | | | |
1 NFAQLEVIFT ILGAKKPSLE CRFLNLLSES KKTVSQEFLE ALLLEMLAST DESGVLSLIP 60
61 IILKLDIEV
|
| Detection Method: | |
| Confidence: | 1.6 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [337-509] |
1 11 21 31 41 51
| | | | | |
1 AIKHIFRLLE LIQLENLNDP LFSSHIWDLI IQSHANAREL SDFFAKINEY CSRKGPDSYF 60
61 LINHPAYVKS ITKQLFTLSS LQWKNLLQAL LDQVNHDSTN RVPLYLIRIC LEGLSEGASR 120
121 ATLDEVKPIL SQVFTLESFN NSLQWDLKYH IMEVYDDIVP AEELEKIDYV LSS
|
| Detection Method: | |
| Confidence: | 1.6 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [510-748] |
1 11 21 31 41 51
| | | | | |
1 NIFDTTSADV EELFFYCFKL REYISFDLSD AKKKFMRHFE ILDEERKSNL SYSVVSKFAT 60
61 LVNNNFTREQ ISSLIDSLLL NSTNLSSLLK NDDIFEETNI TYALINKLAS SYHQTFALEA 120
121 LIQIPIQCIN KNVRVALINN LTCESFCLDS ATRECLLHLL SSPTFKSNIE TNFYELCEKT 180
181 IMSPEMAISE TGDEKKEIED KISIFEKVWT NHLSQAKEPV SEKFLESGYD IVKQSMSLS
|
| Detection Method: | |
| Confidence: | 1.6 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [749-1003] |
1 11 21 31 41 51
| | | | | |
1 NGDSKLIIAG FTIAKFLKPD NKHRDIQGMA ISYAVKILEN YSENFESETI PLFRISMSTL 60
61 YKIITTGQGD ISKHKSRILD IFSKIMLRYH SKKVYHAPEE QEMFLVHSLL TENKLEYIFA 120
121 EYLNIEHTDK CDSALGFCLE ESLKQGPDAF NRLLWNSAKS FSTISQPCAE KFVRVFIIMS 180
181 KRIARDNNLG HHLFVIALLE AYTYCDIEKF GYKSYLLLFN AIKEFLVSKP WLFSQYCIEM 240
241 LLPFCLKTLA FIVNH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1004-1174] |
1 11 21 31 41 51
| | | | | |
1 ESTDEINEGF INIIEVIDHM LLVHRFKFSN RHHLFNSVLC QILEIIAIHD GTLCANSADA 60
61 VARLITNYCE PYNVSNAQNG QKNNLSSKIS LIKQSIRKNV LVVLTKYIQL SITTQFSLNI 120
121 KKSLQPGIHA IFDILSQNEL NQLNAFLDTP GKQYFKALYL QYKKVGKWRE D
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.825 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.823 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.809 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.642 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.634 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.610 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.604 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.564 | N/A | N/A | a.146.1 | Telomeric repeat binding factor (TRF) dimerisation domain |
| View | Download | 0.524 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.512 | N/A | N/A | a.146.1 | Telomeric repeat binding factor (TRF) dimerisation domain |
| View | Download | 0.512 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.505 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.498 | N/A | N/A | a.146.1 | Telomeric repeat binding factor (TRF) dimerisation domain |
| View | Download | 0.444 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.415 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.369 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.362 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.357 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.343 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.323 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.319 | N/A | N/A | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.308 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.301 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.287 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.279 | N/A | N/A | a.39.3 | Cloroperoxidase |
| View | Download | 0.276 | N/A | N/A | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.259 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.256 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.247 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.246 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.243 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.230 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.227 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.226 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.225 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.220 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.213 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.213 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.204 | N/A | N/A | a.118.9 | ENTH/VHS domain |
|
Region A: Residues: [767-977] |
1 11 21 31 41 51
| | | | | |
1 PDNKHRDIQG MAISYAVKIL ENYSENFESE TIPLFRISMS TLYKIITTGQ GDISKHKSRI 60
61 LDIFSKIMLR YHSKKVYHAP EEQEMFLVHS LLTENKLEYI FAEYLNIEHT DKCDSALGFC 120
121 LEESLKQGPD AFNRLLWNSA KSFSTISQPC AEKFVRVFII MSKRIARDNN LGHHLFVIAL 180
181 LEAYTYCDIE KFGYKSYLLL FNAIKEFLVS K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [978-1174] |
1 11 21 31 41 51
| | | | | |
1 PWLFSQYCIE MLLPFCLKTL AFIVNHESTD EINEGFINII EVIDHMLLVH RFKFSNRHHL 60
61 FNSVLCQILE IIAIHDGTLC ANSADAVARL ITNYCEPYNV SNAQNGQKNN LSSKISLIKQ 120
121 SIRKNVLVVL TKYIQLSITT QFSLNIKKSL QPGIHAIFDI LSQNELNQLN AFLDTPGKQY 180
181 FKALYLQYKK VGKWRED
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.825 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.823 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.809 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.642 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.634 | N/A | N/A | a.118.8 | TPR-like |
