Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJR008W.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..338] | [1..338] |
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2.0E-99 | [4..337] | [8..296] |
|
|
6.0E-99 | [4..337] | [8..296] |
|
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2.0E-94 | [2..333] | [4..307] |
|
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2.0E-88 | [3..335] | [2..289] |
|
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3.0E-87 | [4..318] | [11..280] |
|
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1.0E-85 | [2..325] | [3..277] |
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2.0E-85 | [3..335] | [5..292] |
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2.0E-83 | [3..335] | [2..289] |
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1.0E-78 | [3..331] | [2..274] |
|
Region A: Residues: [1-213] |
1 11 21 31 41 51
| | | | | |
1 MSIRPATHAG SWYSNRAQEL SQQLHTYLIK STLKGPIHNA RIIICPHAGY RYCGPTMAYS 60
61 YASLDLNRNV KRIFILGPSH HIYFKNQILV SAFSELETPL GNLKVDTDLC KTLIQKEYPE 120
121 NGKKLFKPMD HDTDMAEHSL EMQLPMLVET LKWREISLDT VKVFPMMVSH NSVDVDRCIG 180
181 NILSEYIKDP NNLFIVSSDF CHWGRRFQYT GYV
|
| Detection Method: |  |
| Confidence: | 12.21 |
| Match: | 1b4uB |
| Description: | LigB subunit of an aromatic-ring-opening dioxygenase LigAB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [214-338] |
1 11 21 31 41 51
| | | | | |
1 GSKEELNDAI QEETEVEMLT ARSKLSHHQV PIWQSIEIMD RYAMKTLSDT PNGERYDAWK 60
61 QYLEITGNTI CGEKPISVIL SALSKIRDAG PSGIKFQWPN YSQSSHVTSI DDSSVSYASG 120
121 YVTIG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.521 | a.22.1 | Histone-fold |
| View | Download | 0.537 | a.74.1 | Cyclin-like |
| View | Download | 0.581 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.652 | a.24.4 | Hemerythrin |
| View | Download | 0.549 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.518 | d.82.2 | Frataxin-like |
| View | Download | 0.454 | a.24.3 | Cytochromes |
| View | Download | 0.445 | b.60.1 | Lipocalins |
| View | Download | 0.434 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.423 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.406 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.399 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.397 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.394 | a.22.1 | Histone-fold |
| View | Download | 0.380 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.378 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.375 | a.24.3 | Cytochromes |
| View | Download | 0.371 | b.60.1 | Lipocalins |
| View | Download | 0.371 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.367 | a.24.3 | Cytochromes |
| View | Download | 0.365 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.363 | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.358 | a.74.1 | Cyclin-like |
| View | Download | 0.351 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.348 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.344 | a.74.1 | Cyclin-like |
| View | Download | 0.339 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.333 | b.123.1 | Hypothetical protein TM1070 |
| View | Download | 0.332 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.327 | c.55.2 | Creatinase/prolidase N-terminal domain |
| View | Download | 0.326 | d.110.4 | SNARE-like |
| View | Download | 0.325 | a.19.1 | Fertilization protein |
| View | Download | 0.322 | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.316 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.315 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.314 | c.95.1 | Thiolase-like |
| View | Download | 0.308 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.305 | a.1.1 | Globin-like |
| View | Download | 0.298 | a.126.1 | Serum albumin-like |
| View | Download | 0.297 | a.19.1 | Fertilization protein |
| View | Download | 0.296 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.295 | b.118.1 | FAS1 domain |
| View | Download | 0.294 | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.288 | a.1.1 | Globin-like |
| View | Download | 0.288 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.286 | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.282 | d.82.2 | Frataxin-like |
| View | Download | 0.282 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.282 | a.39.1 | EF-hand |
| View | Download | 0.278 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.273 | a.1.1 | Globin-like |
| View | Download | 0.272 | c.47.1 | Thioredoxin-like |
| View | Download | 0.271 | d.21.1 | Diaminopimelate epimerase-like |
| View | Download | 0.269 | d.82.2 | Frataxin-like |
| View | Download | 0.267 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.264 | a.11.2 | Second domain of FERM |
| View | Download | 0.264 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.256 | b.118.1 | FAS1 domain |
| View | Download | 0.254 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | a.4.1 | Homeodomain-like |
| View | Download | 0.251 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.249 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.247 | a.74.1 | Cyclin-like |
| View | Download | 0.244 | a.1.1 | Globin-like |
| View | Download | 0.237 | b.7.4 | Rab geranylgeranyltransferase alpha-subunit, insert domain |
| View | Download | 0.234 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.233 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.229 | a.64.1 | Saposin |
| View | Download | 0.225 | a.63.1 | Apolipophorin-III |
| View | Download | 0.223 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.222 | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.221 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.220 | d.93.1 | SH2 domain |
| View | Download | 0.217 | d.168.1 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| View | Download | 0.214 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.203 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.202 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.201 | d.58.33 | Formylmethanofuran:tetrahydromethanopterin formyltransferase |
