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View Structure Prediction Details

Protein: MPP10
Organism: Saccharomyces cerevisiae
Length: 593 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MPP10.

Description E-value Query
Range
Subject
Range
SPCC737.08 - midasin
MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1
292.0 [0..85] [571..3921]
gi|4204276, gi|2... - gi|4204276|gb|AAD10657.1| Hypothetical protein [Arabidopsis thaliana], pir||B96695 hypothetical prot...
288.0 [0..20] [545..4296]
unc-89 - status:Partially_confirmed UniProt:O01761 protein_id:AAP68958.1
270.0 [0..21] [561..1307]
MDN1 - Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex...
MDN1_YEAST - Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDN1 PE=1 SV=1
262.0 [0..15] [501..4043]
kis-PA - The gene kismet is referred to in FlyBase by the symbol Dmel\kis (CG3696, FBgn0086902). It is a prot...
249.0 [0..86] [571..1399]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELFGVLKS NAGRIILKDP SATSKDVKAY IDSVINTCKN GSITKKAELD EITVDGLDAN  60
   61 QVWWQVKLVL DSIDGDLI

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.65
Match:
Description: No description for 1l8mA was found.

Predicted Domain #2
Region A:
Residues: [79-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGIQELKDVV TPSHNLSDGS TLNSSSGEES ELEEAESVFK EKQMLSADVS EIEEQSNDSL  60
   61 SENDEEPSMD DEKTSAEAA

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.65
Match:
Description: No description for 1l8mA was found.

Predicted Domain #3
Region A:
Residues: [158-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REEFAEEKRI SSGQDERHSS PDPYGINDKF FDLEKFNRDT LAAEDSNEAS EGSEDEDIDY  60
   61 FQDMPSD

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.65
Match:
Description: No description for 1l8mA was found.

Predicted Domain #4
Region A:
Residues: [225-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEEEEAIYYE DFFDKPTKEP VKKHSDVKDP KEDEELDEEE HDSAMDKVKL DLFADEEDEP  60
   61 NAEGVGEASD KNLSSFEK

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.65
Match:
Description: No description for 1l8mA was found.

Predicted Domain #5
Region A:
Residues: [303-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQIEIRKQIE QLENEAVAEK KWSLKGEVKA KDRPEDALLT EELEFDRTAK PVPVITSEVT  60
   61 ESLEDMIRRR IQDSNFDDLQ RRTLLDITRK SQRPQFELSD VKSSKSLAEI YEDDYTRAED 120
  121 ESALSEELQK AHSEISELYA NLVYKLDVLS SVHFVPKPAS TSLEIRVETP TISMEDAQPL 180
  181 YMSNASSLAP QEIYNVGKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [502-593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKDGEIRLKN GVAMSKEELT REDKNRLRRA LKRKRSKANL PNVNKRSKRN DVVDTLSKAK  60
   61 NITVINQKGE KKDVSGKTKK SRSGPDSTNI KL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle