YRC Public Data Repository - Protein Structure Prediction

Protein:	YJL213W
Organism:	Saccharomyces cerevisiae
Length:	331 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL213W.

Description	E-value	Query Range	Subject Range
YJV3_YEAST - Uncharacterized protein YJL213W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL213W ... YJL213W - Protein of unknown function that may interact with ribosomes; periodically expressed during the yeas...	5.0E-56	[1..331]	[1..331]
gi\|241770091, gi... - gi\|241770091\|ref\|ZP_04767504.1\| amidohydrolase [Sulfolobus solfataricus 98/2], gi\|241218236\|gb\|EER53... gi\|13815829, gi\|... - gi\|15899262\|ref\|NP_343867.1\| Prolidase (Xaa-Pro dipeptidase) (pepQ-like3) [Sulfolobus solfataricus P... gi\|25394478 - pir\|\|B90425 prolidase (Xaa-Pro dipeptidase) (pepQ-like3) [imported] - Sulfolobus solfataricus	1.0E-50	[1..330]	[73..399]
gi\|7482036 - pir\|\|F69071 aryldialkylphosphatase related protein - Methanobacterium thermoautotrophicum (strain De... gi\|2622653, gi\|1... - gi\|2622653\|gb\|AAB86008.1\| aryldialkylphosphatase related protein [Methanothermobacter thermautotroph...	3.0E-49	[4..331]	[95..418]
gi\|14599415 - gi\|14599415\|emb\|CAC43858.1\| urease [Solanum tuberosum]	1.0E-44	[23..330]	[262..602]
gi\|10336584 - gi\|10336584\|dbj\|BAB13788.1\| urease alpha subunit UreC [Vibrio parahaemolyticus]	3.0E-43	[27..330]	[125..453]
gi\|14599161, gi\|... - gi\|32170831\|gb\|AAO85883.1\| leaf ubiquitous urease [Glycine max], gi\|14599161\|emb\|CAC43845.1\| urease ...	4.0E-43	[23..330]	[384..723]
URE1_BACSB - Urease subunit alpha OS=Bacillus sp. (strain TB-90) GN=ureC PE=1 SV=1 gi\|216362, gi\|10... - gi\|216362\|dbj\|BAA03325.1\| urease alpha subunit [Bacillus sp. TB-90], pir\|\|C36950 urease (EC 3.5.1.5)...	2.0E-42	[26..330]	[126..455]

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Predicted Domain #1

Region A:
Residues: [1-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKSVALL RIRYTLEAAL ARGFTTVRDC GGAEGFLKAE IRQGSLNGPR LITCGHAISQ  60
   61 TGGHGDLRSG ALPASAFDSC SCHFGQVGVV ADGVPECYKA AREEFRRGAD FIKIMGGGGV 120
  121 ASPTDKISNK QFCDDEIKAL VDVANSYHTY VTAHAYTAEA IQNCIKLGVK GIEHGNLLDE 180
  181 RTAELMAELG CYLTPTLVTY KVMGSDQFSA FLGPENSRKN TEVLYKGIDA MKIAQKKKVK 240
  241 ICFGSDLLGP LYGYQTQEFR IRGKVQTTQE ILLSATVTPA EMNGLGDKLG QIKPGFIADL 300
  301 LMMKSNPLDD ITILDEPESN ILFVMKEGRI Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1e9yB_
Description:	alpha-Subunit of urease; alpha-subunit of urease, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.3383791442796	bayes_pls_golite062009
catalytic activity	0.935564737557247	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: