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View Structure Prediction Details

Protein: PFD1
Organism: Saccharomyces cerevisiae
Length: 109 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFD1.

Description E-value Query
Range
Subject
Range
PFD1 - Subunit of heterohexameric prefoldin, which binds cytosolic chaperonin and transfers target proteins...
1.0E-46 [1..109] [1..109]
PFD1_MOUSE - Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1
0.005 [7..107] [15..116]
SPBC1D7.01 - prefoldin subunit 1
PFD1_SCHPO - Probable prefoldin subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1D7.01 PE...
0.009 [1..109] [1..110]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIAQEMTV SLRNARTQLD MVNQQLAYLD RQEKLAELTK KELESYPTDK VWRSCGKSFI  60
   61 LQDKSKYVND LSHAETVLLD QRKTLKIKKN YLETTVEKTI DNLKALMKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle