YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG27
Organism:	Saccharomyces cerevisiae
Length:	196 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG27.

Description	E-value	Query Range	Subject Range
ATG27_YEAST - Autophagy-related protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG27 PE=1 ... ATG27 - Type I membrane protein involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; ...	374.0	[0..1]	[196..76]
ATG27_KLULA - Autophagy-related protein 27 OS=Kluyveromyces lactis GN=ATG27 PE=3 SV=1 ATG27_KLULA - Autophagy-related protein 27 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC...	182.0	[0..1]	[196..77]
ATG27_CANGA - Autophagy-related protein 27 OS=Candida glabrata GN=ATG27 PE=3 SV=1 ATG27_CANGA - Autophagy-related protein 27 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 ...	180.0	[0..1]	[196..76]
ATG27_ASHGO - Autophagy-related protein 27 OS=Ashbya gossypii GN=ATG27 PE=3 SV=1 ATG27_ASHGO - Autophagy-related protein 27 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y...	114.0	[0..1]	[181..76]
ATG27_CANAL - Autophagy-related protein 27 OS=Candida albicans GN=ATG27 PE=3 SV=1 ATG27_CANAL - Autophagy-related protein 27 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ATG27 PE=3 SV=1	101.0	[0..2]	[196..72]
ATG27_DEBHA - Autophagy-related protein 27 precursor - Debaryomyces hansenii (Yeast) (Torulaspora hansenii) gi\|50424333, gi\|... - gi\|50424333\|ref\|XP_460753.1\| hypothetical protein DEHA0F09889g [Debaryomyces hansenii CBS767], gi\|49...	90.0	[0..2]	[196..77]
ATG27_YARLI - Autophagy-related protein 27 OS=Yarrowia lipolytica GN=ATG27 PE=3 SV=1 ATG27_YARLI - Autophagy-related protein 27 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG27 PE=3 SV=1	55.0	[0..1]	[196..78]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCGLTDVIL PGKDAITTQI IDFDKNIGFN VEETESALTL TLKGATWGAN SFDAKLEFQC  60
   61 NDNMKQDELT SHTWADKSIQ LTLKGPSGCL KSKDDDKKNG DGDNGKDGDS EGKKPAKKAG 120
  121 GTSWFTWLFL YALLFTLIYL MVVSFLNTRG GSFQDFRAEF IQRSTQFLTS LPEFCKEVVS 180
  181 RILGRSTAQR GGYSAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDGDNGKDGD SEGKKPAKKA GGTSWFTWLF LYALLFTLIY LMVVSFLNTR GGSFQDFRAE  60
   61 FIQRSTQFLT SLPEFCKEVV SRILGRSTAQ RGGYSAV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.619789
Match:	PF09451.1
Description:	No description for PF09451.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.820	N/A	N/A	f.15.1	Small-conductance potassium channel

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits