| Protein: | VPS35 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 944 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS35.
| Description | E-value | Query Range |
Subject Range |
|
|
1383.0 | [0..1] | [944..1] |
|
|
1105.0 | [0..8] | [856..17] |
|
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1104.0 | [0..8] | [856..17] |
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1104.0 | [0..8] | [856..436] |
|
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1103.0 | [0..8] | [856..17] |
|
Region A: Residues: [1-273] |
1 11 21 31 41 51
| | | | | |
1 MAYADSPENA IAVIKQRTAL MNRCLSQHKL MESLQHTSIM LTELRNPNLS PKKYYELYVI 60
61 IFDSLTNLST YLIENHPQNH HLADLYELVQ YTGNVVPRLY LMITVGTSYL TFNEAPKKEI 120
121 LKDMIEMCRG VQNPIRGLFL RYYLSQRTKE LLPEDDPSFN SQFIMNNFIE MNKLWVRLQH 180
181 QGPLRERETR TRERKELQIL VGSQLVRLSQ IIDDNFQMYK QDILPTILEQ VIQCRDLVSQ 240
241 EYLLDVICQV FADEFHLKTL DTLLQTTLHL NPD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [274-892] |
1 11 21 31 41 51
| | | | | |
1 VSINKIVLTL VDRLNDYVTR QLEDDPNATS TNAYLDMDVF GTFWDYLTVL NHERPDLSLQ 60
61 QFIPLVESVI VLSLKWYPNN FDNLNKLFEL VLQKTKDYGQ KNISLESEHL FLVLLSFQNS 120
121 KLQLTSSTTA PPNSPVTSKK HFIFQLISQC QAYKNILALQ SISLQKKVVN EIIDILMDRE 180
181 VEEMADNDSE SKLHPPGHSA YLVIEDKLQV QRLLSICEPL IISRSGPPAN VASSDTNVDE 240
241 VFFNRHDEEE SWILDPIQEK LAHLIHWIMN TTSRKQTMKN KIQFSLEAQL EILLLIKSSF 300
301 IKGGINVKYT FPAIITNFWK LMRKCRMIQE YLLKKRPDNK TLLSHYSNLL KQMFKFVSRC 360
361 INDIFNSCNN SCTDLILKLN LQCAILADQL QLNEISYDFF SQAFTIFEES LSDSKTQLQA 420
421 LIYIAQSLQK TRSLYKEAYY DSLIVRCTLH GSKLLKKQDQ CRAVYLCSHL WWATEISNIG 480
481 EEEGITDNFY RDGKRVLECL QRSLRVADSI MDNEQSCELM VEILNRCLYY FIHGDESETH 540
541 ISIKYINGLI ELIKTNLKSL KLEDNSASMI TNSISDLHIT GENNVKASSN ADDGSVITDK 600
601 ESNVAIGSDG TYIQLNTLN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [893-944] |
1 11 21 31 41 51
| | | | | |
1 GSSTLIRGVV ATASGSKLLH QLKYIPIHHF RRTCEYIESQ REVDDRFKVI YV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.565 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.458 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.457 | a.5.2 | UBA-like |
| View | Download | 0.428 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.424 | a.5.2 | UBA-like |
