| Protein: | TRK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1235 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRK1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1235] | [1..1235] |
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0.0 | [1..1219] | [1..1225] |
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0.0 | [472..1209] | [142..881] |
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0.0 | [316..1224] | [195..980] |
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0.0 | [336..1229] | [157..1050] |
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0.0 | [569..1210] | [249..863] |
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0.0 | [553..1199] | [183..793] |
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0.0 | [646..1206] | [347..832] |
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0.0 | [646..1206] | [355..840] |
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Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MHFRRTMSRV PTLASLEIRY KKSFGHKFRD FIALCGHYFA PVKKYIFPSF IAVHYFYTIS 60
61 LTLITSILLY PIKNTRYIDT LFLAAGAVTQ GGLNTVDINN LSLYQQIVLY IVCCISTPIA 120
121 VHSCLAFVRL YWFERYF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.505 | a.26.1 | 4-helical cytokines |
| View | Download | 0.468 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.445 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.537 | a.74.1 | Cyclin-like |
| View | Download | 0.472 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.537 | a.74.1 | Cyclin-like |
| View | Download | 0.505 | a.26.1 | 4-helical cytokines |
| View | Download | 0.472 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.468 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.445 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.364 | a.1.1 | Globin-like |
| View | Download | 0.362 | a.74.1 | Cyclin-like |
| View | Download | 0.360 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.349 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.346 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.343 | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.342 | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.310 | a.1.1 | Globin-like |
| View | Download | 0.309 | a.74.1 | Cyclin-like |
| View | Download | 0.307 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.305 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.294 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.292 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.275 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.273 | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.267 | a.1.1 | Globin-like |
| View | Download | 0.257 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.253 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.248 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.242 | a.39.1 | EF-hand |
| View | Download | 0.241 | a.39.1 | EF-hand |
| View | Download | 0.238 | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.235 | a.123.1 | Nuclear receptor ligand-binding domain |
| View | Download | 0.227 | d.74.4 | Prokaryotic AspRS, insert domain |
| View | Download | 0.217 | a.74.1 | Cyclin-like |
| View | Download | 0.212 | c.23.2 | Toll/Interleukin receptor TIR domain |
| View | Download | 0.207 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
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Region A: Residues: [138-625] |
1 11 21 31 41 51
| | | | | |
1 DGIRDSSRRN FKMRRTKTIL ERELTARTMT KNRTGTQRTS YPRKQAKTDD FQEKLFSGEM 60
61 VNRDEQDSVH SDQNSHDISR DSSNNNTNHN GSSGSLDDFV KEDETDDNGE YQENNSYSTV 120
121 GSSSNTVADE SLNQKPKPSS LRFDEPHSKQ RPARVPSEKF AKRRGSRDIS PADMYRSIMM 180
181 LQGKHEATAE DEGPPLVIGS PADGTRYKSN VNKLKKATGI NGNKIKIRDK GNESNTDQNS 240
241 VSSEANSTAS VSDESSLHTN FGNKVPSLRT NTHRSNSGPI AITDNAETDK KHGPSIQFDI 300
301 TKPPRKISKR VSTFDDLNPK SSVLYRKKAS KKYLMKHFPK ARRIRQQIKR RLSTGSIEKN 360
361 SSNNVSDRKP ITDMDDDDDD DDNDGDNNEE YFADNESGDE DERVQQSEPH SDSELKSHQQ 420
421 QQEKHQLQQN LHRMYKTKSF DDNRSRAVPM ERSRTIDMAE AKDLNELART PDFQKMVYQN 480
481 WKAHHRKK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [626-1235] |
1 11 21 31 41 51
| | | | | |
1 PNFRKRGWNN KIFEHGPYAS DSDRNYPDNS NTGNSILHYA ESILHHDGSH KNGSEEASSD 60
61 SNENIYSTNG GSDHNGLNNY PTYNDDEEGY YGLHFDTDYD LDPRHDLSKG SGKTYLSWQP 120
121 TIGRNSNFLG LTRAQKDELG GVEYRAIKLL CTILVVYYVG WHIVAFVMLV PWIILKKHYS 180
181 EVVRDDGVSP TWWGFWTAMS AFNDLGLTLT PNSMMSFNKA VYPLIVMIWF IIIGNTGFPI 240
241 LLRCIIWIMF KISPDLSQMR ESLGFLLDHP RRCFTLLFPK AATWWLLLTL AGLNITDWIL 300
301 FIILDFGSTV VKSLSKGYRV LVGLFQSVST RTAGFSVVDL SQLHPSIQVS YMLMMYVSVL 360
361 PLAISIRRTN VYEEQSLGLY GDMGGEPEDT DTEDDGNDED DDEENESHEG QSSQRSSSNN 420
421 NNNNNRKKKK KKKTENPNEI STKSFIGAHL RKQLSFDLWF LFLGLFIICI CEGDKIKDVQ 480
481 EPNFNIFAIL FEIVSAYGTV GLSLGYPDTN QSFSRQFTTL SKLVIIAMLI RGKNRGLPYS 540
541 LDRAIILPSD RLEHIDHLEG MKLKRQARTN TEDPMTEHFK RSFTDVKHRW GALKRKTTHS 600
601 RNPKRSSTTL
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| Detection Method: | |
| Confidence: | 178.0 |
| Match: | PF02386 |
| Description: | Cation transport protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [310-724] |
1 11 21 31 41 51
| | | | | |
1 DMYRSIMMLQ GKHEATAEDE GPPLVIGSPA DGTRYKSNVN KLKKATGING NKIKIRDKGN 60
61 ESNTDQNSVS SEANSTASVS DESSLHTNFG NKVPSLRTNT HRSNSGPIAI TDNAETDKKH 120
121 GPSIQFDITK PPRKISKRVS TFDDLNPKSS VLYRKKASKK YLMKHFPKAR RIRQQIKRRL 180
181 STGSIEKNSS NNVSDRKPIT DMDDDDDDDD NDGDNNEEYF ADNESGDEDE RVQQSEPHSD 240
241 SELKSHQQQQ EKHQLQQNLH RMYKTKSFDD NRSRAVPMER SRTIDMAEAK DLNELARTPD 300
301 FQKMVYQNWK AHHRKKPNFR KRGWNNKIFE HGPYASDSDR NYPDNSNTGN SILHYAESIL 360
361 HHDGSHKNGS EEASSDSNEN IYSTNGGSDH NGLNNYPTYN DDEEGYYGLH FDTDY
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| Detection Method: | |
| Confidence: | 2.5 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [725-893] |
1 11 21 31 41 51
| | | | | |
1 DLDPRHDLSK GSGKTYLSWQ PTIGRNSNFL GLTRAQKDEL GGVEYRAIKL LCTILVVYYV 60
61 GWHIVAFVML VPWIILKKHY SEVVRDDGVS PTWWGFWTAM SAFNDLGLTL TPNSMMSFNK 120
121 AVYPLIVMIW FIIIGNTGFP ILLRCIIWIM FKISPDLSQM RESLGFLLD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [894-1031] |
1 11 21 31 41 51
| | | | | |
1 HPRRCFTLLF PKAATWWLLL TLAGLNITDW ILFIILDFGS TVVKSLSKGY RVLVGLFQSV 60
61 STRTAGFSVV DLSQLHPSIQ VSYMLMMYVS VLPLAISIRR TNVYEEQSLG LYGDMGGEPE 120
121 DTDTEDDGND EDDDEENE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1032-1235] |
1 11 21 31 41 51
| | | | | |
1 SHEGQSSQRS SSNNNNNNNR KKKKKKKTEN PNEISTKSFI GAHLRKQLSF DLWFLFLGLF 60
61 IICICEGDKI KDVQEPNFNI FAILFEIVSA YGTVGLSLGY PDTNQSFSRQ FTTLSKLVII 120
121 AMLIRGKNRG LPYSLDRAII LPSDRLEHID HLEGMKLKRQ ARTNTEDPMT EHFKRSFTDV 180
181 KHRWGALKRK TTHSRNPKRS STTL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
