YRC Public Data Repository - Protein Structure Prediction

Protein:	ASF1
Organism:	Saccharomyces cerevisiae
Length:	279 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASF1.

Description	E-value	Query Range	Subject Range
gi\|114675723 - gi\|114675723\|ref\|XP_001171489.1\| PREDICTED: anti-silencing function 1B [Pan troglodytes] gi\|254071443, gi... - gi\|254071443\|gb\|ACT64481.1\| ASF1 anti-silencing function 1 homolog B (S. cerevisiae) protein [synthe... ASF1B - ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	8.0E-71	[1..169]	[1..170]
gi\|55249890 - gb\|AAH86067.1\| Unknown (protein for MGC:98427) [Xenopus laevis] ASF1B_MOUSE - Histone chaperone ASF1B OS=Mus musculus GN=Asf1b PE=1 SV=1	2.0E-69	[1..170]	[1..171]
ASF1B_ARATH - Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1	4.0E-61	[1..214]	[1..218]
asf1-PB, asf1-PA - The gene anti-silencing factor 1 is referred to in FlyBase by the symbol Dmel\asf1 (CG9383, FBgn0029... gi\|220954228, gi... - gi\|220954228\|gb\|ACL89657.1\| asf1-PA [synthetic construct], gi\|220944436\|gb\|ACL84761.1\| asf1-PA [synt...	2.0E-59	[1..154]	[1..154]
ASF1 - Nucleosome assembly factor, involved in chromatin assembly and disassembly, anti-silencing protein t... gi\|207344081 - gi\|207344081\|gb\|EDZ71337.1\| YJL115Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409390 - gi\|190409390\|gb\|EDV12655.1\| anti-silencing protein 1 [Saccharomyces cerevisiae RM11-1a] ASF1_YEAST - Histone chaperone ASF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASF1 PE=1 SV=1	3.0E-57	[1..279]	[1..279]

Back

Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVSLLGIK VLNNPAKFTD PYEFEITFEC LESLKHDLEW KLTYVGSSRS LDHDQELDSI  60
   61 LVGPVPVGVN KFVFSADPPS AEL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPASELVSVT VILLSCSYDG REFVRVGYYV NNEYDEEELR ENPPAKVQVD HIVRNILAEK  60
   61 PRVTRFNIVW DNENEGDLYP PEQPGVDDEE EEDDEEED

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.45
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [182-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDEDDEDDED DDQEDGEGEA EEAAEEEEEE EEKTEDNETN LEEEEEDIEN SDGDEEEGEE  60
   61 EVGSVDKNED GNDKKRRKIE GGSTDIESTP KDAARSTN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.45
Match:	1l8mA
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits