YRC Public Data Repository - Protein Structure Prediction

Protein:	PAM16
Organism:	Saccharomyces cerevisiae
Length:	149 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAM16.

Description	E-value	Query Range	Subject Range
TIM16_YEAST - Mitochondrial import inner membrane translocase subunit TIM16 OS=Saccharomyces cerevisiae (strain AT... gi\|151945019 - gi\|151945019\|gb\|EDN63274.1\| presequence translocase-asssociated motor [Saccharomyces cerevisiae YJM7... PAM16 - Constituent of the import motor (PAM complex) component of the Translocase of the Inner Mitochondria... gi\|190409397 - gi\|190409397\|gb\|EDV12662.1\| mitochondrial import inner membrane translocase subunit TIM16 [Saccharom...	1.0E-52	[1..149]	[1..149]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-33	[2..109]	[7..109]
gi\|15809738, gi\|... - gi\|32306447\|gb\|AAM63549.1\| thaxtomin resistance protein TXR1 [Arabidopsis thaliana], gi\|18411133\|ref...	1.0E-32	[1..109]	[1..104]
ENSPTRT00000014222 - null gi\|23503082, gi\|... - gi\|48146841\|emb\|CAG33643.1\| Magmas [Homo sapiens], gi\|27363461\|ref\|NP_057153.8\| mitochondria-associa...	2.0E-32	[3..122]	[2..119]
TIM16_MOUSE - Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=1 SV=1	5.0E-30	[3..122]	[2..119]
tim16 - TIM23 translocase complex subunit Tim16 TIM16_SCHPO - Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 9...	1.0E-28	[4..121]	[5..121]
gi\|31432696, gi\|... - gi\|37535410\|ref\|NP_922007.1\| putative pol polyprotein [Oryza sativa (japonica cultivar-group)], gb\|A...	1.0E-27	[12..109]	[1..92]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHRAFIQVI ITGTQVFGKA FAEAYRQAAS QSVKQGATNA SRRGTGKGEY GGITLDESCK  60
   61 ILNIEESKGD LNMDKINNRF NYLFEVNDKE KGGSFYLQSK VYRAAERLKW ELAQREKNAK 120
  121 AKAGDASTAK PPPNSTNSSG ADNSASSNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.75
Match:	1gh6A
Description:	Large T antigen, the N-terminal J domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.99176821643352	bayes_pls_golite062009
protein binding	1.51948307385917	bayes_pls_golite062009
transporter activity	1.30714426711368	bayes_pls_golite062009
substrate-specific transporter activity	0.819666949578493	bayes_pls_golite062009
unfolded protein binding	0.59395300664956	bayes_pls_golite062009
heat shock protein binding	0.335529947375073	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: