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View Structure Prediction Details

Protein: TRL1
Organism: Saccharomyces cerevisiae
Length: 827 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRL1.

Description E-value Query
Range
Subject
Range
TRL1 - tRNA ligase, required for tRNA splicing; composed of three essential domains containing the phosphod...
TRNL_YEAST - tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRL1 PE=1 SV=1
0.0 [1..827] [1..827]
trl1 - tRNA ligase Trl1
TRNL_SCHPO - tRNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trl1 PE=3 SV=2
0.0 [40..805] [26..761]
TRNL_CANAL - tRNA ligase OS=Candida albicans GN=TRL1 PE=3 SV=1
0.0 [6..809] [3..798]
gi|19712821, gi|... - gi|19712821|gb|AAL93718.1| 2',3'-cyclic nucleotide 3'-phosphodiesterase [Fusobacterium nucleatum sub...
2.0E-81 [9..299] [411..677]

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Predicted Domain #1
Region A:
Residues: [1-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPYDGKRT VTQLVNELEK AEKLSGRGRA YRRVCDLSHS NKKVISWKFN EWDYGKNTIT  60
   61 LPCNARGLFI SDDTTNPVIV ARGYDKFFNV GEVNFTKWNW IEENCTGPYD VTIKANGCII 120
  121 FISGLEDGTL VVCSKHSTGP RADVDRNHAE AGEKQLLRQL AAMNINRSDF ARMLYTHNVT 180
  181 AVAEYCDDSF EEHILEYPLE KAGLYLHGVN VNKAEFETWD MKDVSQMASK YGFRCVQCIT 240
  241 SNTLEDLKKF LDNCSATGSF EGQEIEGFVI RCHLKSTEKP FFFKYKFEEP YLMYRQWREV 300
  301 TKDYISN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [308-827]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSRVFKFRKH KFITNKYLDF AIPILESSPK ICENYLKGFG VIELRNKFLQ SYGMSGLEIL  60
   61 NHEKVAELEL KNAIDYDKVD ERTKFLIFPI SVIGCGKTTT SQTLVNLFPD SWGHIQNDDI 120
  121 TGKDKSQLMK KSLELLSKKE IKCVIVDRNN HQFRERKQLF EWLNELKEDY LVYDTNIKVI 180
  181 GVSFAPYDKL SEIRDITLQR VIKRGNNHQS IKWDELGEKK VVGIMNGFLK RYQPVNLDKS 240
  241 PDNMFDLMIE LDFGQADSSL TNAKQILNEI HKAYPILVPE IPKDDEIETA FRRSLDYKPT 300
  301 VRKIVGKGNN NQQKTPKLIK PTYISAKIEN YDEIIELVKR CIASDAELTE KFKHLLASGK 360
  361 VQKELHITLG HVMSSREKEA KKLWKSYCNR YTDQITEYNN NRIENAQGSG NNQNTQVKTT 420
  421 DKLNFRLEKL CWDEKIIAIV VELSKDKDGC IIDENNEKIK GLCCQNKIPH ITLCKLESGV 480
  481 KAVYSNVLCE KVESAEVDEN IKVVKLDNSK EFVGSVYLNF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle