| Protein: | MRPL8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 238 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL8.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-94 | [1..238] | [1..238] |
|
|
4.0E-63 | [6..210] | [7..190] |
|
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6.0E-52 | [5..188] | [7..180] |
|
|
1.0E-43 | [7..135] | [8..124] |
|
|
3.0E-43 | [6..127] | [3..120] |
|
|
5.0E-43 | [6..127] | [2..119] |
|
|
6.0E-43 | [6..127] | [3..128] |
|
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7.0E-43 | [6..127] | [3..128] |
|
|
7.0E-43 | [7..137] | [8..126] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MTVGIARKLS RDKAHRDALL KNLACQLFQH ESIVSTHAKC KEASRVAERI ITWTKRAITT 60
61 SNSVAQAELK SQIQSQLFLA GDNRKLMKRL FSEIAPRYLE RPGGYTRVLR LEPRANDSAP 120
121 QSVLELVDSP VMSESHTVNR GNLKMWLLVK SVINDDANQL P
|
| Detection Method: |  |
| Confidence: | 162.38764 |
| Match: | 1gd8A_ |
| Description: | Prokaryotic ribosomal protein L17 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 9.91574154879999 | bayes_pls_golite062009 |
| structural molecule activity | 9.33953790706737 | bayes_pls_golite062009 |
| binding | 1.23500675594838 | bayes_pls_golite062009 |
| protein binding | 0.558431147696839 | bayes_pls_golite062009 |
|
Region A: Residues: [162-238] |
1 11 21 31 41 51
| | | | | |
1 HNPLTLQNLH KVAKFKAEAQ LHGEIMLIKQ VLLKEMSLPY DEALENERTQ ALLKEVYSSS 60
61 LPKKTKKPSS YVMVPRP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.704 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.366 | a.77.1 | DEATH domain |
| View | Download | 0.511 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.422 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.484 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.704 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.523 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.518 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.511 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.484 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.352 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.349 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.331 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.319 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.319 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.308 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.306 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.304 | a.118.1 | ARM repeat |
| View | Download | 0.302 | d.58.49 | YajQ-like |
| View | Download | 0.302 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.302 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.296 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.282 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.280 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.277 | a.5.2 | UBA-like |
| View | Download | 0.276 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.275 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.274 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.274 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.273 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.270 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.260 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.259 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.258 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.246 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.241 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.240 | d.206.1 | YggU-like |
| View | Download | 0.235 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.235 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.230 | a.65.1 | Annexin |
| View | Download | 0.223 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.223 | a.135.1 | Tetraspanin |
| View | Download | 0.222 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.220 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.218 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.211 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.209 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.208 | a.74.1 | Cyclin-like |
| View | Download | 0.207 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.207 | a.39.1 | EF-hand |
| View | Download | 0.207 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.205 | d.227.1 | OsmC-like |
| View | Download | 0.202 | a.2.3 | Chaperone J-domain |
