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View Structure Prediction Details

Protein: YJL045W
Organism: Saccharomyces cerevisiae
Length: 634 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL045W.

Description E-value Query
Range
Subject
Range
gi|190409455 - gi|190409455|gb|EDV12720.1| succinate dehydrogenase flavoprotein subunit, mitochondrial precursor [S...
SDHX_YEAST - Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisi...
YJL045W - Minor succinate dehydrogenase isozyme; homologous to Sdh1p, the major isozyme reponsible for the oxi...
0.0 [1..634] [1..634]
SDHA_SCHPO - Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharom...
sdh1 - succinate dehydrogenase Sdh1
0.0 [3..634] [5..641]
gi|15030102 - gi|15030102|gb|AAH11301.1| Sdha protein [Mus musculus]
0.0 [3..634] [12..661]
SDHA_RAT - Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdh...
0.0 [12..634] [19..656]
gi|347134, gi|47... - gi|4759080|ref|NP_004159.1| succinate dehydrogenase complex, subunit A, flavoprotein precursor [Homo...
0.0 [1..634] [16..664]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [2..634] [12..665]
gi|2282573 - gi|2282573|dbj|BAA21636.1| flavoprotein subunit of complex II [Ascaris suum]
0.0 [1..634] [1..645]
SdhA-PA, SdhA-PC... - The gene Succinate dehydrogenase A is referred to in FlyBase by the symbol Dmel\SdhA (CG17246, FBgn0...
gi|220955190, gi... - gi|220955190|gb|ACL90138.1| Scs-fp-PA [synthetic construct], gi|220945436|gb|ACL85261.1| Scs-fp-PA [...
0.0 [3..634] [14..661]
gi|6649876 - gi|6649876|gb|AAF21611.1|AF018287_5 SdhA; succinate dehydrogenase flavoprotein subunit [papaya bunch...
0.0 [38..634] [3..596]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLKKGITK SYILQRTFTS SSVVRQIGEV KSESKPPAKY HIIDHEYDCV VVGAGGAGLR  60
   61 AAFGLAEAGY KTACLSKLFP TRSHTVAAQG GINAALGNMH PDDWKSHMYD TVKGSDWLGD 120
  121 QDAIHYMTRE APKSVIELEH YGMPFSRTED GRIYQRAFGG QSKDFGKGGQ AYRTCAVADR 180
  181 TGHAMLHTLY GQALKNNTHF FIEYFAMDLL THNGEVVGVI AYNQEDGTIH RFRAHKTVIA 240
  241 T

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [398-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPTKWTGEAL TIDEETGEDK VIPGLMACGE AACVSVHGAN RLGANSLLDL VVFGRAVANT  60
   61 IADTLQPGLP HKPLASNIGH ESIANL

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [613-634]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVIAHTLDEN ECAPVPPAVR SY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1178.0
Match: 1kf6A_
Description: Fumarate reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [242-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGYGRAYFSC TSAHTCTGDG NAMVSRAGFP LEDLEFVQFH PSGIYGSGCL ITEGARGEGG  60
   61 FLLNSEGERF MERYAPTAKD LASRDVVSRA ITMEIRAGRG VGKNKDHILL QLSHLPPEVL 120
  121 KERLPGISET AAVFAGVDVT QEPIPVLPTV HYNMGG

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [484-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKVRNARGSL KTSQIRLNMQ RTMQKDVSVF RTQDTLDEGV RNITEVDKTF EDVHVSDKSM  60
   61 IWNSDLVETL ELQNLLTCAT QTAVSASKRK ESRGAHARED YAKRDDVNWR KHTLSWQKGT 120
  121 STPVKIKYR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1178.0
Match: 1kf6A_
Description: Fumarate reductase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle