| Protein: | VPS53 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 822 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS53.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..822] | [1..822] |
|
|
0.0 | [10..737] | [6..765] |
|
|
0.0 | [7..587] | [41..672] |
|
|
0.0 | [7..601] | [44..682] |
|
|
0.0 | [11..718] | [35..729] |
|
|
0.0 | [4..737] | [15..709] |
|
Region A: Residues: [1-30] |
1 11 21 31 41 51
| | | | | |
1 MLEGTVDYDP LEDITNILFS KESLNNIDEL
|
|
Region B: Residues: [219-520] |
1 11 21 31 41 51
| | | | | |
1 QMIDWCLDKL LFEMKEIFRV DDEAGSLENL SRRYIYFKKI LNNFNSKFAD YFLKDWEMAV 60
61 RLTTTFYHIT HKDLQTLLKR EFKDKNPSID LFMTALQSTL DFEKYIDVRF SKKIKEPKLS 120
121 SCFEPYLTLW VSHQNQMMEK KFLSYMSEPK YPSNETESLV LPSSADLFRT YRSVLTQTLE 180
181 LIDNNANDSI LTSLANFFSR WLQTYSQKIL LPLLLPDNIE VQDKLEAAKY TVLLINTADY 240
241 CATTIDQLED KLSEFSGNRE KLANSFTKTK NIYDDLLAKG TSFLLNRVIP LDLNFVWREF 300
301 IN
|
| Detection Method: |  |
| Confidence: | 7.96 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [31-49] |
1 11 21 31 41 51
| | | | | |
1 ISITRSYKKQ LQEDILKEE
|
|
Region B: Residues: [67-77] |
1 11 21 31 41 51
| | | | | |
1 RKVFQDFKET Q
|
|
Region C: Residues: [191-218] |
1 11 21 31 41 51
| | | | | |
1 ISEHDTALTM ELREGACELL DCDTSTRA
|
| Detection Method: | |
| Confidence: | 7.96 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [50-66] |
1 11 21 31 41 51
| | | | | |
1 NELKEHPKNS AEIEASL
|
|
Region B: Residues: [78-190] |
1 11 21 31 41 51
| | | | | |
1 DVSASTELTI SNLTEGISYL DIAKKNLTHS LTLFQNLKIL TDSYIQCNEL LSQGSFKKMV 60
61 SPYKIMCSLA ENTFISYKSL DEINYLLSSI SRLKGDTLSK IKQNYNALFS GGN
|
| Detection Method: | |
| Confidence: | 7.96 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [521-822] |
1 11 21 31 41 51
| | | | | |
1 NDWSNAAIED YSRYMVTLKS VLKMPALTDA SIKQQQEQPS TLAFILSQFN RDVYKWNFLD 60
61 KVIDIITTNF VSNTIRLLQP VPPFSLAGSK RKFETRTVVN IGEQLLLDLE LLKEIFHTLP 120
121 ESVSNDSDLR ENTSYKRVKR HADNNIDQLL KFIKLLMAPL DSADDYYETY SKLTNNNPDS 180
181 AVWSFVLALK GIPWDLALWK KLWSAYNLET DDTDEGSRPD SNRDLFIFKW DKVLLGQFEN 240
241 NLARMQDPNW SKFVRQDLKI SPPVMKRIVS TPQIQQQKEE QKKQSLSVKD FVSHSRFFNR 300
301 GT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
