YRC Public Data Repository - Protein Structure Prediction

Protein:	OST1
Organism:	Saccharomyces cerevisiae
Length:	476 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OST1.

Description	E-value	Query Range	Subject Range
RPN1 - ribophorin I	635.0	[0..18]	[475..20]
gi\|114589051, gi... - gi\|114589053\|ref\|XP_516729.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114589...	634.0	[0..18]	[475..20]
gi\|55725354 - gi\|55725354\|emb\|CAH89541.1\| hypothetical protein [Pongo abelii] RPN1_PONAB - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=...	634.0	[0..18]	[475..20]
RPN1_MACFA - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=R... gi\|109098074 - gi\|109098074\|ref\|XP_001097494.1\| PREDICTED: ribophorin I [Macaca mulatta]	632.0	[0..18]	[475..20]
gi\|73984484 - gi\|73984484\|ref\|XP_848830.1\| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein glycos...	626.0	[0..18]	[475..20]
RPN1_PIG - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa GN=RPN1 PE=1 ...	621.0	[0..20]	[475..23]
gi\|74207369 - gi\|74207369\|dbj\|BAE30867.1\| unnamed protein product [Mus musculus]	618.0	[0..19]	[475..22]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQVWFSWIV GLFLCFFNVS SAAQYEPPAT WENVDYKRTI DVSNAYISET IEITIKNIAS  60
   61 EPATEYFTAF ESGIFSKVSF FSAYFTNEAT FLNSQLLANS TTAPGDDGE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.866	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #2

Region A:
Residues: [110-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEIRYGIIQF PNAISPQEEV SLVIKSFYNT VGIPYPEHVG MSEEQHLLWE TNRLPLSAYD  60
   61 TKKASFTLIG SSSFEEYHPP NDESLLGKAN GNSFEFGPWE DIPRFSSNET LAIVYSHNAP 120
  121 LNQVVNLRRD IWLSHWASTI QFEEYYELTN KAAKLSKGFS RLELMKQIQT QNMRQTHFVT 180
  181 VLDM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [294-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLPEGATDHY FTDLVGLVST SHAERDHFFI RPRFPIFGGW NYNFTVGWTN KLSDFLHVSS  60
   61 GSDEKFVASI PILNGPPDTV YDNVELSVFL PEGAEIFDID SPVPFTNVSI ETQKSYFDLN 120
  121 KGHVKLTFSY RNLISQVANG QVLIKYDYPK SSFFKKPLSI ACYIFTALMG VFVLKTLNMN 180
  181 VTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits