YRC Public Data Repository - Protein Structure Prediction

Protein:	MET28
Organism:	Saccharomyces cerevisiae
Length:	187 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MET28.

Description	E-value	Query Range	Subject Range
gi\|13775109 - gi\|13775109\|gb\|AAK39131.1\|AF369791_1 bZIP transcription factor 3 [Phaseolus vulgaris]	112.0	[0..4]	[184..185]
BZP16_ARATH - bZIP transcription factor 16 OS=Arabidopsis thaliana GN=BZIP16 PE=1 SV=1	108.0	[0..3]	[174..189]
gi\|7489475 - pir\|\|T03241 G-box binding factor 1A - rice gi\|77554087, gi\|... - gi\|77554087\|gb\|ABA96883.1\| bZIP transcription factor family protein, expressed [Oryza sativa (japoni...	108.0	[0..9]	[187..196]
gi\|109082934 - gi\|109082934\|ref\|XP_001106328.1\| PREDICTED: similar to CCAAT/enhancer binding protein epsilon [Macac...	106.0	[0..27]	[174..122]
gi\|35036, gi\|107921 - gi\|35036\|emb\|CAA36794.1\| unnamed protein product [Homo sapiens], pir\|\|S12788 transcription factor NF...	105.0	[0..76]	[170..242]
gi\|2801478, gi\|9... - gi\|9626985\|ref\|NP_056890.1\| gag polyprotein [Murine osteosarcoma virus], gi\|2801478\|gb\|AAC82572.1\| p... gi\|332196 - gi\|332196\|gb\|AAA46573.1\| gag-fos fusion protein [FBR murine osteosarcoma virus]	105.0	[0..3]	[176..324]
gi\|625499 - gi\|625499\|pir\|\|A60089 transforming protein (c-fos) - African clawed frog	105.0	[0..8]	[161..32]
gi\|7488943, gi\|3... - pir\|\|T14911 bZIP DNA-binding protein - parsley, gi\|3336906\|emb\|CAA71770.1\| bZIP DNA-binding protein ...	105.0	[0..4]	[171..197]
gi\|5381313 - gi\|5381313\|gb\|AAD42938.1\|AF084972_1 G-Box binding protein 2 [Catharanthus roseus]	105.0	[0..8]	[173..189]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKQGWEKK STNIDIASRK GMNVNNLSEH LQNLISSDSE LGSRLLSLLL VSSGNAEELI  60
   61 SMINNGQDVS QFKKLREPRK GKVAATTAVV VKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEAPVSTSNE LDKIKQERRR KNTEASQRFR IRKKQKNFEN MNKLQNLNTQ INKLRDRIEQ  60
   61 LNKENEFWKA KLNDINEIKS LKLLNDIKRR NMGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits