| Protein: | SIM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 475 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIM1.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..1] | [475..1] |
|
|
356.0 | [0..206] | [474..47] |
|
|
354.0 | [0..202] | [474..155] |
|
|
348.0 | [0..3] | [474..9] |
|
|
333.0 | [0..206] | [475..145] |
|
Region A: Residues: [1-199] |
1 11 21 31 41 51
| | | | | |
1 MKFSTAVTTL ISSGAIVSAL PHVDVHQEDA HQHKRAVAYK YVYETVVVDS DGHTVTPAAS 60
61 EVATAATSAI ITTSVLAPTS SAAAGIAASI AVSSAALAKN EKISDAAASA TASTSQGASS 120
121 SSSSSSATST LESSSVSSSS EEAAPTSTVV STSSATQSSA SSATKSSTSS TSPSTSTSTS 180
181 TSSTSSSSSS SSSSSSSSS
|
| Detection Method: |  |
| Confidence: | 13.03 |
| Match: | |
| Description: | No description for 1m2vB was found. |
|
Region A: Residues: [200-339] |
1 11 21 31 41 51
| | | | | |
1 GSGSIYGDLA DFSGPSEKFQ DGTIPCDKFP SGQGVISIDW IGEGGWSGVE NTDTSTGGSC 60
61 KEGSYCSYSC QPGMSKTQWP SDQPSDGRSV GGLLCKNGYL YRSNTDADYL CEWGVEAAYV 120
121 VSKLSKGVAI CRTDYPGTEN
|
| Detection Method: | |
| Confidence: | 2.09691 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [340-475] |
1 11 21 31 41 51
| | | | | |
1 MVIPTYVEGG SSLPLTVVDQ DTYFTWEGKK TSAQYYVNNA GVSVEDGCIW GTSGSGIGNW 60
61 APLNFGAGST GGVTYLSLIP NPNNSDALNY NVKIVAADDS SNVIGECVYE NGEFSGGADG 120
121 CTVSVTSGKA HFVLYN
|
| Detection Method: | |
| Confidence: | 39.79588 |
| Match: | PF03856 |
| Description: | Beta-glucosidase (SUN family) |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
