YRC Public Data Repository - Protein Structure Prediction

Protein:	SHQ1
Organism:	Saccharomyces cerevisiae
Length:	507 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHQ1.

Description	E-value	Query Range	Subject Range
SHQ1_YEAST - Protein SHQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHQ1 PE=1 SV=1 gi\|207344374 - gi\|207344374\|gb\|EDZ71540.1\| YIL104Cp-like protein [Saccharomyces cerevisiae AWRI1631] SHQ1 - Chaperone protein required for the assembly of box H/ACA snoRNPs and thus for pre-rRNA processing, f... gi\|190406315 - gi\|190406315\|gb\|EDV09582.1\| hypothetical protein SCRG_05276 [Saccharomyces cerevisiae RM11-1a]	0.0	[1..507]	[1..507]
SHQ1_SCHPO - Protein shq1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shq1 PE=3 SV=1 SPBC8D2.13 - SHQ1 family protein	0.0	[1..482]	[1..447]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..469]	[205..639]
CG10055-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10055 (CG10055, FBgn0037482). It is a prote...	5.0E-89	[157..507]	[192..496]
gi\|10436985 - gi\|10436985\|dbj\|BAB14947.1\| unnamed protein product [Homo sapiens]	1.0E-64	[259..458]	[6..184]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITPRFSITQ DEEFIFLKIF ISNIRFSAVG LEIIIQENMI IFHLSPYYLR LRFPHELIDD  60
   61 ERSTAQYDSK DECINVKVAK LNKNEYFEDL DLPTKLLARQ GDLAGADALT ENTDAKKTQK 120
  121 PLIQEVETDG VSNNIKDDVK TIGQMGEGFN WEIEQKMDSS TNNGILKTKY GFDNLYDTVI 180
  181 SVSTSNGNDI NELDDPEHTD ANDRVIERLR KENLKFDPEY YVSEYMTHKY GNEEDLEING 240
  241 IKELLKFTPS IVKQYLQWYK DSTNPNLVMP IEF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [274-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDEEQKQMQD NLPKKSYLVE DIKPLYVTIL SVLFSYVFEQ IENEGTHTTE SAWTMGKLCP  60
   61 QISFLDQQLK QVNELQDGMK EISKVNKDSS LIKIAIITGI RRALSYPLHR NYDLAMKAWT 120
  121 FVYYILRGGK RLVIRALLDI HETFRFHDVY YVYDKVLLDD LTAWFISQGS ENVIRSLALE 180
  181 MRKEQESLSK QDIEFECIAS FNEQTGEPEW ETLNIREMEI LAESEYREQQ QNPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [360-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDSSLIKIAI ITGIRRALSY PLHRNYDLAM KAWTFVYYIL RGGKRLVIRA LLDIHETFRF  60
   61 HDVYYVYDKV LLDDLTAWFI SQGSENVIRS LALEMRKEQE SLSKQDIEFE CIASFNEQTG 120
  121 EPEWETLNIR EMEILAESEY REQQQNPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits