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View Structure Prediction Details

Protein: YHR219W
Organism: Saccharomyces cerevisiae
Length: 624 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR219W.

Description E-value Query
Range
Subject
Range
YRF1-8, YRF1-5, ... - One of several telomeric Y' element-encoded DNA helicases, known as Y'-Help1 (Y'-HELicase Protein 1)...
YRF18_YEAST, YRF... - Y' element ATP-dependent helicase protein 1 copy 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...
0.0 [3..624] [1175..1796]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [3..624] [603..1224]

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Predicted Domain #1
Region A:
Residues: [1-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNQRKEKK GQHVGCCGSR TDLSADTVEL IERMDRLAEN QATASMSIVA LPSSFQESNS  60
   61 SDRCRKYCSS DEDSDTCIHG SANASTNATT NSSTNATTTA SINVRTSATT TASINVRTSA 120
  121 TTTESTNSNT NATTTESTNS STNATTTASI NVRTSATTTE STNSNTSATT TESTDSNTSA 180
  181 TTTESTDSNT SATTTASTNS STNATTTAST NSSTNATTTE STNASAKEDA NKDGNAEDNR 240
  241 FHPVTDINKE SYKRKGSQMV LLERKKLKAQ FPNTSENMNV LQFLGFRSDE IKHLFLYGID 300
  301 IYFCPEGVFT QYGLCKGCQK MFELCVCWAG QKVSYRRMAW EALAVERMLR NDEEYKEYLE 360
  361 DIEPYHGDPV GYLKF

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 14.64
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [376-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSVKRGEIYS QIQRNYAWYL AITRRRETIS VLDSTRGKQG SQVFRMSGRQ IKELYYKVWS  60
   61 NLRESKTEVL QYFLNWDEKK CREEWEAKDD TVFVEALEKV GVFQRLRSMT SAGLQGPQYV 120
  121 KLQFSRHHRQ LRSRYELSLG MHLRDQLALG VTPSKVPHWT AFLSMLIGLF YNKTFRQKLE 180
  181 YLLEQISEVW LLPHWVDLAN VEVLAADNTR VPLYMLMVAV HKELDSDDVP DGRFDIILLC 240
  241 RDSSREVGE

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.85
Match: 1itwA
Description: Monomeric isocitrate dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle