YRC Public Data Repository - Protein Structure Prediction

Protein:	EGD2
Organism:	Saccharomyces cerevisiae
Length:	174 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EGD2.

Description	E-value	Query Range	Subject Range
gi\|2224667 - gi\|2224667\|dbj\|BAA20818.1\| KIAA0363 [Homo sapiens]	8.0E-49	[2..173]	[1354..1521]
NACA_PINTA - Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1	1.0E-45	[6..173]	[55..204]
EGD2 - Alpha subunit of the heteromeric nascent polypeptide-associated complex (NAC) involved in protein so... NACA_YEAS7 - Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain YJM789) GN=... NACA_YEAST - Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508... gi\|207344495 - gi\|207344495\|gb\|EDZ71619.1\| YHR193Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405968 - gi\|190405968\|gb\|EDV09235.1\| GAL4 enhancer protein [Saccharomyces cerevisiae RM11-1a]	6.0E-45	[1..174]	[1..174]
gi\|4115918 - gi\|4115918\|gb\|AAD03429.1\| similar to nascent polypeptide associated complex alpha chain [Arabidopsis...	3.0E-43	[8..173]	[80..232]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-42	[10..173]	[66..214]
Nacalpha-PC, Nac... - The gene Nascent polypeptide associated complex protein alpha subunit is referred to in FlyBase by t... gi\|220944530, gi... - gi\|220954496\|gb\|ACL89791.1\| Nacalpha-PA [synthetic construct], gi\|220944530\|gb\|ACL84808.1\| Nacalpha-...	2.0E-42	[10..173]	[66..215]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIPENANV TVLNKNEKKA RELIGKLGLK QIPGIIRVTF RKKDNQIYAI EKPEVFRSAG  60
   61 GNYVVFGEAK VDNFTQKLAA AQQQAQASGI MPSNEDVATK SPEDIQADMQ AAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.107905
Match:	PF01849
Description:	NAC domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVNAAAEED DEEGEVDAGD LNKDDIELVV QQTNVSKNQA IKALKAHNGD LVNAIMSLSK  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.0
Match:	PF00627
Description:	UBA/TS-N domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits