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View Structure Prediction Details

Protein: SSP1
Organism: Saccharomyces cerevisiae
Length: 571 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSP1.

Description E-value Query
Range
Subject
Range
SSP1_YEAST - Sporulation-specific protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSP1 PE=1...
SSP1 - Protein involved in the control of meiotic nuclear division and coordination of meiosis with spore f...
0.0 [1..571] [1..571]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSGTYEND PSGEITSTSP KQSKQKKPTK FRERMRRWLQ NGKNNNHQGE EDVPEIFNKN  60
   61 FYPQTGMTAF NNNDNGEVQD VTNNFFLPSE DESGPVQSSV KTFLTGNNDE DSNFQQNQNP 120
  121 KQKSELPKSP YRQKPTQEIA LLKDLFVTNK YDDPYLNSST RFG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NITSTFPSSL SLRTVTLQTI KKRIDCISAK KKEVWKTEEK FLKDILMWLQ SSNFEDPDTI  60
   61 SLIHEIEKIF EEDIHFEQNV SDCLKEISNN FEYICMRETQ LINEGNILKN DLKKYAKARE 120
  121 HKGEKHEDTE VLREKVISSQ KSFDVTKRHY KHAISITTRQ LFMNLAFEYY ENCSDMKDIS 180
  181 RKYLQESLST LQTIDTLSFS EELEKIRKRR FDKFWAKTNP DPTNNIQKF

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.06
Match: 1jkyA
Description: Anthrax toxin lethal factor, N- and C-terminal domains; Anthrax toxin lethal factor, middle domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [393-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNMRTGVAGF NDSLMNHLYG KLSFGVAPVE EELQNSQPEH TDVPENVWNE VLSDYNSMDG  60
   61 NPITSNKFLS AKELEPDQLV ELLAQEKEEK EAKNISSSTA EVPSISQPEI KKENLESNDS 120
  121 LILRSTKRNV NVNAASLRNL SIKKTQVKPE SASEESKVLA AALNDAKQNL DENVWRTPI

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.06
Match: 1jkyA
Description: Anthrax toxin lethal factor, N- and C-terminal domains; Anthrax toxin lethal factor, middle domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle