| Protein: | SSP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 571 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..571] | [1..571] |
|
Region A: Residues: [1-163] |
1 11 21 31 41 51
| | | | | |
1 MRSSGTYEND PSGEITSTSP KQSKQKKPTK FRERMRRWLQ NGKNNNHQGE EDVPEIFNKN 60
61 FYPQTGMTAF NNNDNGEVQD VTNNFFLPSE DESGPVQSSV KTFLTGNNDE DSNFQQNQNP 120
121 KQKSELPKSP YRQKPTQEIA LLKDLFVTNK YDDPYLNSST RFG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.236 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
|
Region A: Residues: [164-392] |
1 11 21 31 41 51
| | | | | |
1 NITSTFPSSL SLRTVTLQTI KKRIDCISAK KKEVWKTEEK FLKDILMWLQ SSNFEDPDTI 60
61 SLIHEIEKIF EEDIHFEQNV SDCLKEISNN FEYICMRETQ LINEGNILKN DLKKYAKARE 120
121 HKGEKHEDTE VLREKVISSQ KSFDVTKRHY KHAISITTRQ LFMNLAFEYY ENCSDMKDIS 180
181 RKYLQESLST LQTIDTLSFS EELEKIRKRR FDKFWAKTNP DPTNNIQKF
|
| Detection Method: | |
| Confidence: | 7.06 |
| Match: | 1jkyA |
| Description: | Anthrax toxin lethal factor, N- and C-terminal domains; Anthrax toxin lethal factor, middle domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [393-571] |
1 11 21 31 41 51
| | | | | |
1 VNMRTGVAGF NDSLMNHLYG KLSFGVAPVE EELQNSQPEH TDVPENVWNE VLSDYNSMDG 60
61 NPITSNKFLS AKELEPDQLV ELLAQEKEEK EAKNISSSTA EVPSISQPEI KKENLESNDS 120
121 LILRSTKRNV NVNAASLRNL SIKKTQVKPE SASEESKVLA AALNDAKQNL DENVWRTPI
|
| Detection Method: | |
| Confidence: | 7.06 |
| Match: | 1jkyA |
| Description: | Anthrax toxin lethal factor, N- and C-terminal domains; Anthrax toxin lethal factor, middle domain |
| Matching Structure (courtesy of the PDB): |
|
